Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28292 | 5' | -43.3 | NC_005902.1 | + | 58263 | 0.68 | 0.999997 |
Target: 5'- -aGUaUAUAGCUUcaGUGUUAAAAGGu -3' miRNA: 3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 67748 | 0.68 | 0.999997 |
Target: 5'- -aGUaUAUAGCUUaaGUGUUAAAAGGu -3' miRNA: 3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 99649 | 0.68 | 0.999998 |
Target: 5'- cUUGUaUAUAGCUUaGGUGUUAAAGa- -3' miRNA: 3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 78894 | 0.69 | 0.99999 |
Target: 5'- cUUGUUUauauAUAGCUUagaGGGUGgaUAAAAGGu -3' miRNA: 3'- -AACAAG----UAUCGAA---CCCACa-AUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 48283 | 0.69 | 0.99999 |
Target: 5'- uUUGUUUauauAUAGCUUaaGUGUUAAAGGGu -3' miRNA: 3'- -AACAAG----UAUCGAAccCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 162430 | 0.69 | 0.999993 |
Target: 5'- uUUGUgugUAUAGCUUaGGUGUUAAAGa- -3' miRNA: 3'- -AACAa--GUAUCGAAcCCACAAUUUUcc -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 87105 | 0.69 | 0.999986 |
Target: 5'- ----aUAUAGCUUaGGG-GUUAAAGGGu -3' miRNA: 3'- aacaaGUAUCGAA-CCCaCAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 49144 | 0.69 | 0.999993 |
Target: 5'- cUUGUUUAUAuauaaCUUGGGUGUUAAAu-- -3' miRNA: 3'- -AACAAGUAUc----GAACCCACAAUUUucc -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 3476 | 0.69 | 0.999995 |
Target: 5'- uUUGUaUAUAGCUUaGGUGUUAAAAu- -3' miRNA: 3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 116855 | 0.69 | 0.999981 |
Target: 5'- cUGUUCAuaUAGCUUaGaUGUUAAAGGGu -3' miRNA: 3'- aACAAGU--AUCGAAcCcACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 157890 | 0.69 | 0.99999 |
Target: 5'- ----aUAUAGCUUaGGUGUUAAAAGa -3' miRNA: 3'- aacaaGUAUCGAAcCCACAAUUUUCc -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 71686 | 0.69 | 0.999993 |
Target: 5'- uUUGUaUAUAGCUUaGGUGUUAGAAu- -3' miRNA: 3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 69408 | 0.69 | 0.999993 |
Target: 5'- cUUGUaUAUAGCUUaGGUGUUAAAAa- -3' miRNA: 3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 105874 | 0.69 | 0.999993 |
Target: 5'- aUGaUUUAUGGUg-GGGUGUUAAAAGu -3' miRNA: 3'- aAC-AAGUAUCGaaCCCACAAUUUUCc -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 48613 | 0.69 | 0.999986 |
Target: 5'- ----aUAUAGUUUaGGUGUUAAAAGGu -3' miRNA: 3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 15506 | 0.7 | 0.999932 |
Target: 5'- gUGUauaUAUAGUUUaGGUGUUAAAAGGu -3' miRNA: 3'- aACAa--GUAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 100130 | 0.7 | 0.999973 |
Target: 5'- aUGUUCAuauaUAGCUUaGaUGUUAAAGGGg -3' miRNA: 3'- aACAAGU----AUCGAAcCcACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 134368 | 0.7 | 0.999963 |
Target: 5'- -aGUaUAUAGCUUaaGUGUUAAAAGGg -3' miRNA: 3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 165977 | 0.7 | 0.999963 |
Target: 5'- uUUGUaUAUGGCUUauGUGUUAAAGGGu -3' miRNA: 3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 130910 | 0.7 | 0.999973 |
Target: 5'- aUUGUUUAUAGCUUaGGauUUAAAGGGu -3' miRNA: 3'- -AACAAGUAUCGAAcCCacAAUUUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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