miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 142025 0.81 0.918576
Target:  5'- gUGUaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aACAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 165977 0.7 0.999963
Target:  5'- uUUGUaUAUGGCUUauGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 134368 0.7 0.999963
Target:  5'- -aGUaUAUAGCUUaaGUGUUAAAAGGg -3'
miRNA:   3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 169577 0.72 0.99946
Target:  5'- -aGUgUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 13228 0.74 0.997243
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 157890 0.69 0.99999
Target:  5'- ----aUAUAGCUUaGGUGUUAAAAGa -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 86050 0.7 0.999973
Target:  5'- aUGUUCAuauaUAGCUUaGaUGUUAAAGGGg -3'
miRNA:   3'- aACAAGU----AUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 80777 0.77 0.985202
Target:  5'- -gGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 114438 0.71 0.999796
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 3102 0.72 0.999737
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAAu- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 20153 0.77 0.978607
Target:  5'- -cGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 167185 0.78 0.970055
Target:  5'- -cGUaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 162430 0.69 0.999993
Target:  5'- uUUGUgugUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAa--GUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 48283 0.69 0.99999
Target:  5'- uUUGUUUauauAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- -AACAAG----UAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 23505 0.71 0.99991
Target:  5'- gUUGUaUAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 71493 0.73 0.998956
Target:  5'- uUUGUUUauAUAGCcuaGGUGUUAAAGGGg -3'
miRNA:   3'- -AACAAG--UAUCGaacCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 16921 0.74 0.997243
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 125569 0.78 0.966725
Target:  5'- cUUGUUUauauAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -AACAAG----UAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 122804 0.72 0.99946
Target:  5'- -aGUaUAUAGCUUaGGG-GUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAA-CCCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 156822 0.71 0.999796
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.