miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 3102 0.72 0.999737
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAAu- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 169577 0.72 0.99946
Target:  5'- -aGUgUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 74809 0.76 0.990119
Target:  5'- gUGUauaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aACAa--GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 54371 0.78 0.963142
Target:  5'- uUUGUguaugUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -AACAa----GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 48613 0.69 0.999986
Target:  5'- ----aUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 149241 0.71 0.999881
Target:  5'- cUGUgUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- aACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 169152 0.72 0.999322
Target:  5'- cUUGUUCAUAGCUUaGaUGUUAAAAGu -3'
miRNA:   3'- -AACAAGUAUCGAAcCcACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 162629 0.79 0.946145
Target:  5'- uUUGUaUAUAGCUUGGGUGUUAAc--- -3'
miRNA:   3'- -AACAaGUAUCGAACCCACAAUUuucc -5'
28292 5' -43.3 NC_005902.1 + 67392 0.71 0.999844
Target:  5'- gUGUaUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- aACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 28811 0.8 0.930464
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 122804 0.72 0.99946
Target:  5'- -aGUaUAUAGCUUaGGG-GUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAA-CCCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 5415 0.71 0.999796
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 45356 0.73 0.998717
Target:  5'- --aUUUAUAGCUUGGaUGUUAAAAGa -3'
miRNA:   3'- aacAAGUAUCGAACCcACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 39305 0.74 0.996709
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 42267 0.77 0.981009
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 125569 0.78 0.966725
Target:  5'- cUUGUUUauauAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -AACAAG----UAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 49144 0.69 0.999993
Target:  5'- cUUGUUUAUAuauaaCUUGGGUGUUAAAu-- -3'
miRNA:   3'- -AACAAGUAUc----GAACCCACAAUUUucc -5'
28292 5' -43.3 NC_005902.1 + 87105 0.69 0.999986
Target:  5'- ----aUAUAGCUUaGGG-GUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAA-CCCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 130910 0.7 0.999973
Target:  5'- aUUGUUUAUAGCUUaGGauUUAAAGGGu -3'
miRNA:   3'- -AACAAGUAUCGAAcCCacAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 23505 0.71 0.99991
Target:  5'- gUUGUaUAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.