miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 169168 0.68 0.999997
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 13436 0.68 0.999999
Target:  5'- -aGUaUAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 55157 0.67 1
Target:  5'- gUGUaUAUAGCUUGaGaGUUAAAGGGu -3'
miRNA:   3'- aACAaGUAUCGAACcCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 145072 0.66 1
Target:  5'- gUGUaUAUAGCUUaGGUaUUAAAGGGu -3'
miRNA:   3'- aACAaGUAUCGAAcCCAcAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 164876 0.66 1
Target:  5'- ----aUAUAGCUUaaGUGUUAAAGGGa -3'
miRNA:   3'- aacaaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 63270 0.66 1
Target:  5'- aUGUUCAuaUAGCUUaaagGUUAAAGGGu -3'
miRNA:   3'- aACAAGU--AUCGAAcccaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 135930 0.66 1
Target:  5'- -aGUaUGUAGCUUaGGUGUUAggaucAAAGGg -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAU-----UUUCC- -5'
28292 5' -43.3 NC_005902.1 + 137662 0.66 1
Target:  5'- -aGUaCAUAaCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUcGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 146942 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 105305 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 39617 0.71 0.999796
Target:  5'- ---aUUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aacaAGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 117105 0.71 0.999796
Target:  5'- uUUGUaUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 15506 0.7 0.999932
Target:  5'- gUGUauaUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aACAa--GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 100130 0.7 0.999973
Target:  5'- aUGUUCAuauaUAGCUUaGaUGUUAAAGGGg -3'
miRNA:   3'- aACAAGU----AUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 78894 0.69 0.99999
Target:  5'- cUUGUUUauauAUAGCUUagaGGGUGgaUAAAAGGu -3'
miRNA:   3'- -AACAAG----UAUCGAA---CCCACa-AUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 69408 0.69 0.999993
Target:  5'- cUUGUaUAUAGCUUaGGUGUUAAAAa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 71686 0.69 0.999993
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAGAAu- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 105874 0.69 0.999993
Target:  5'- aUGaUUUAUGGUg-GGGUGUUAAAAGu -3'
miRNA:   3'- aAC-AAGUAUCGaaCCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 104118 0.66 1
Target:  5'- ---cUCAUGGCUUaGaUGUUAAAGGGu -3'
miRNA:   3'- aacaAGUAUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 29609 0.81 0.912202
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.