miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 135833 0.74 0.997243
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 69408 0.69 0.999993
Target:  5'- cUUGUaUAUAGCUUaGGUGUUAAAAa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 78894 0.69 0.99999
Target:  5'- cUUGUUUauauAUAGCUUagaGGGUGgaUAAAAGGu -3'
miRNA:   3'- -AACAAG----UAUCGAA---CCCACa-AUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 100130 0.7 0.999973
Target:  5'- aUGUUCAuauaUAGCUUaGaUGUUAAAGGGg -3'
miRNA:   3'- aACAAGU----AUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 15506 0.7 0.999932
Target:  5'- gUGUauaUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aACAa--GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 117105 0.71 0.999796
Target:  5'- uUUGUaUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 39617 0.71 0.999796
Target:  5'- ---aUUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aacaAGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 31126 0.72 0.999663
Target:  5'- -aGUaUAUAGCUUGGaUGUUAAAAGa -3'
miRNA:   3'- aaCAaGUAUCGAACCcACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 146770 0.72 0.999663
Target:  5'- ----aCAUGGUUUaGGUGUUAGAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 71686 0.69 0.999993
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAGAAu- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 105874 0.69 0.999993
Target:  5'- aUGaUUUAUGGUg-GGGUGUUAAAAGu -3'
miRNA:   3'- aAC-AAGUAUCGaaCCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 105305 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 135930 0.66 1
Target:  5'- -aGUaUGUAGCUUaGGUGUUAggaucAAAGGg -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAU-----UUUCC- -5'
28292 5' -43.3 NC_005902.1 + 63270 0.66 1
Target:  5'- aUGUUCAuaUAGCUUaaagGUUAAAGGGu -3'
miRNA:   3'- aACAAGU--AUCGAAcccaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 164876 0.66 1
Target:  5'- ----aUAUAGCUUaaGUGUUAAAGGGa -3'
miRNA:   3'- aacaaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 145072 0.66 1
Target:  5'- gUGUaUAUAGCUUaGGUaUUAAAGGGu -3'
miRNA:   3'- aACAaGUAUCGAAcCCAcAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 55157 0.67 1
Target:  5'- gUGUaUAUAGCUUGaGaGUUAAAGGGu -3'
miRNA:   3'- aACAaGUAUCGAACcCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 13436 0.68 0.999999
Target:  5'- -aGUaUAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 169168 0.68 0.999997
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 146942 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.