Results 1 - 20 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28292 | 5' | -43.3 | NC_005902.1 | + | 154951 | 1.1 | 0.052248 |
Target: 5'- cUUGUUCAUAGCUUGGGUGUUAAAAGGu -3' miRNA: 3'- -AACAAGUAUCGAACCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 45356 | 0.73 | 0.998717 |
Target: 5'- --aUUUAUAGCUUGGaUGUUAAAAGa -3' miRNA: 3'- aacAAGUAUCGAACCcACAAUUUUCc -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 169152 | 0.72 | 0.999322 |
Target: 5'- cUUGUUCAUAGCUUaGaUGUUAAAAGu -3' miRNA: 3'- -AACAAGUAUCGAAcCcACAAUUUUCc -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 104118 | 0.66 | 1 |
Target: 5'- ---cUCAUGGCUUaGaUGUUAAAGGGu -3' miRNA: 3'- aacaAGUAUCGAAcCcACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 28811 | 0.8 | 0.930464 |
Target: 5'- uUUGUaUAUAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- -AACAaGUAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 162629 | 0.79 | 0.946145 |
Target: 5'- uUUGUaUAUAGCUUGGGUGUUAAc--- -3' miRNA: 3'- -AACAaGUAUCGAACCCACAAUUuucc -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 125569 | 0.78 | 0.966725 |
Target: 5'- cUUGUUUauauAUAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- -AACAAG----UAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 167185 | 0.78 | 0.970055 |
Target: 5'- -cGUaUAUAGCUUaGGUGUUAAAAGGu -3' miRNA: 3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 80777 | 0.77 | 0.985202 |
Target: 5'- -gGUaUAUAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 16921 | 0.74 | 0.997243 |
Target: 5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 74809 | 0.76 | 0.990119 |
Target: 5'- gUGUauaUAUAGCUUaGGUGUUAAAAGGu -3' miRNA: 3'- aACAa--GUAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 42267 | 0.77 | 0.981009 |
Target: 5'- -aGUaUAUAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 29609 | 0.81 | 0.912202 |
Target: 5'- uUUGUaUAUAGCUUaGGUGUUAAAAGGu -3' miRNA: 3'- -AACAaGUAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 39305 | 0.74 | 0.996709 |
Target: 5'- uUUGUaUAUAGCUUaGGUGUUAAAGGa -3' miRNA: 3'- -AACAaGUAUCGAAcCCACAAUUUUCc -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 142025 | 0.81 | 0.918576 |
Target: 5'- gUGUaUAUAGCUUaGGUGUUAAAAGGu -3' miRNA: 3'- aACAaGUAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 20153 | 0.77 | 0.978607 |
Target: 5'- -cGUaUAUAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 13228 | 0.74 | 0.997243 |
Target: 5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 71493 | 0.73 | 0.998956 |
Target: 5'- uUUGUUUauAUAGCcuaGGUGUUAAAGGGg -3' miRNA: 3'- -AACAAG--UAUCGaacCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 104200 | 0.8 | 0.924664 |
Target: 5'- uUUGUUUauAUAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- -AACAAG--UAUCGAAcCCACAAUUUUCC- -5' |
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28292 | 5' | -43.3 | NC_005902.1 | + | 54371 | 0.78 | 0.963142 |
Target: 5'- uUUGUguaugUAUAGCUUaGGUGUUAAAGGGu -3' miRNA: 3'- -AACAa----GUAUCGAAcCCACAAUUUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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