miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 1185 0.66 1
Target:  5'- -------cAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaguaUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 3102 0.72 0.999737
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAAu- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 3476 0.69 0.999995
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAAu- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 5415 0.71 0.999796
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 8456 0.67 1
Target:  5'- -----aAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aacaagUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 13228 0.74 0.997243
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 13436 0.68 0.999999
Target:  5'- -aGUaUAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 15506 0.7 0.999932
Target:  5'- gUGUauaUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aACAa--GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 16921 0.74 0.997243
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 18886 0.78 0.966725
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGGa -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 20153 0.77 0.978607
Target:  5'- -cGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 23505 0.71 0.99991
Target:  5'- gUUGUaUAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 23652 0.76 0.990119
Target:  5'- -aGUaUGUAGCUUaGGUGUUAAAGGGa -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 28811 0.8 0.930464
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 29496 0.76 0.987013
Target:  5'- ----aUAUAGCUUaGGUGUUAAAAGGg -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 29609 0.81 0.912202
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 31126 0.72 0.999663
Target:  5'- -aGUaUAUAGCUUGGaUGUUAAAAGa -3'
miRNA:   3'- aaCAaGUAUCGAACCcACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 37286 0.67 1
Target:  5'- -cGUUCAuaUAGCUUaaGUGUUAAAGGa -3'
miRNA:   3'- aaCAAGU--AUCGAAccCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 39305 0.74 0.996709
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 39617 0.71 0.999796
Target:  5'- ---aUUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aacaAGUAUCGAAcCCACAAUUUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.