miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 42267 0.77 0.981009
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 45356 0.73 0.998717
Target:  5'- --aUUUAUAGCUUGGaUGUUAAAAGa -3'
miRNA:   3'- aacAAGUAUCGAACCcACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 48283 0.69 0.99999
Target:  5'- uUUGUUUauauAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- -AACAAG----UAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 48613 0.69 0.999986
Target:  5'- ----aUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 49144 0.69 0.999993
Target:  5'- cUUGUUUAUAuauaaCUUGGGUGUUAAAu-- -3'
miRNA:   3'- -AACAAGUAUc----GAACCCACAAUUUucc -5'
28292 5' -43.3 NC_005902.1 + 52365 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 54371 0.78 0.963142
Target:  5'- uUUGUguaugUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -AACAa----GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 55157 0.67 1
Target:  5'- gUGUaUAUAGCUUGaGaGUUAAAGGGu -3'
miRNA:   3'- aACAaGUAUCGAACcCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 57268 0.77 0.981009
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 58263 0.68 0.999997
Target:  5'- -aGUaUAUAGCUUcaGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 63270 0.66 1
Target:  5'- aUGUUCAuaUAGCUUaaagGUUAAAGGGu -3'
miRNA:   3'- aACAAGU--AUCGAAcccaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 65799 0.68 0.999997
Target:  5'- ----aUAUAGCUcaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAacCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 67392 0.71 0.999844
Target:  5'- gUGUaUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- aACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 67748 0.68 0.999997
Target:  5'- -aGUaUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 69408 0.69 0.999993
Target:  5'- cUUGUaUAUAGCUUaGGUGUUAAAAa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 71493 0.73 0.998956
Target:  5'- uUUGUUUauAUAGCcuaGGUGUUAAAGGGg -3'
miRNA:   3'- -AACAAG--UAUCGaacCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 71686 0.69 0.999993
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAGAAu- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 74809 0.76 0.990119
Target:  5'- gUGUauaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aACAa--GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 78894 0.69 0.99999
Target:  5'- cUUGUUUauauAUAGCUUagaGGGUGgaUAAAAGGu -3'
miRNA:   3'- -AACAAG----UAUCGAA---CCCACa-AUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 80096 0.81 0.912202
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.