miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 86485 0.77 0.981009
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 131171 0.77 0.981009
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 131985 0.77 0.981009
Target:  5'- cUGUUCAuauaUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aACAAGU----AUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 172858 0.77 0.985202
Target:  5'- -gGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 80777 0.77 0.985202
Target:  5'- -gGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 29496 0.76 0.987013
Target:  5'- ----aUAUAGCUUaGGUGUUAAAAGGg -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 23652 0.76 0.990119
Target:  5'- -aGUaUGUAGCUUaGGUGUUAAAGGGa -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 74809 0.76 0.990119
Target:  5'- gUGUauaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aACAa--GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 162779 0.76 0.991436
Target:  5'- gUGUgaauaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aACAa----GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 88603 0.75 0.994573
Target:  5'- -aGUaagUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAa--GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 39305 0.74 0.996709
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 13228 0.74 0.997243
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 135833 0.74 0.997243
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 88868 0.74 0.997243
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 16921 0.74 0.997243
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 45356 0.73 0.998717
Target:  5'- --aUUUAUAGCUUGGaUGUUAAAAGa -3'
miRNA:   3'- aacAAGUAUCGAACCcACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 71493 0.73 0.998956
Target:  5'- uUUGUUUauAUAGCcuaGGUGUUAAAGGGg -3'
miRNA:   3'- -AACAAG--UAUCGaacCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 169152 0.72 0.999322
Target:  5'- cUUGUUCAUAGCUUaGaUGUUAAAAGu -3'
miRNA:   3'- -AACAAGUAUCGAAcCcACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 169577 0.72 0.99946
Target:  5'- -aGUgUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 122804 0.72 0.99946
Target:  5'- -aGUaUAUAGCUUaGGG-GUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAA-CCCaCAAUUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.