miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 154951 1.1 0.052248
Target:  5'- cUUGUUCAUAGCUUGGGUGUUAAAAGGu -3'
miRNA:   3'- -AACAAGUAUCGAACCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 143801 0.81 0.905543
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAGAGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 29609 0.81 0.912202
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 80096 0.81 0.912202
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 142025 0.81 0.918576
Target:  5'- gUGUaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aACAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 104200 0.8 0.924664
Target:  5'- uUUGUUUauAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -AACAAG--UAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 135996 0.8 0.924664
Target:  5'- aUGaaCAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aACaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 94181 0.8 0.930464
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 28811 0.8 0.930464
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 138804 0.8 0.935977
Target:  5'- gUGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aACAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 162629 0.79 0.946145
Target:  5'- uUUGUaUAUAGCUUGGGUGUUAAc--- -3'
miRNA:   3'- -AACAaGUAUCGAACCCACAAUUuucc -5'
28292 5' -43.3 NC_005902.1 + 54371 0.78 0.963142
Target:  5'- uUUGUguaugUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -AACAa----GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 18886 0.78 0.966725
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGGa -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 125569 0.78 0.966725
Target:  5'- cUUGUUUauauAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- -AACAAG----UAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 167185 0.78 0.970055
Target:  5'- -cGUaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 140962 0.78 0.973139
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 20153 0.77 0.978607
Target:  5'- -cGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 86485 0.77 0.981009
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 57268 0.77 0.981009
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 131985 0.77 0.981009
Target:  5'- cUGUUCAuauaUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aACAAGU----AUCGAAcCCACAAUUUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.