miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 172858 0.77 0.985202
Target:  5'- -gGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 169577 0.72 0.99946
Target:  5'- -aGUgUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 169168 0.68 0.999997
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 169152 0.72 0.999322
Target:  5'- cUUGUUCAUAGCUUaGaUGUUAAAAGu -3'
miRNA:   3'- -AACAAGUAUCGAAcCcACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 167185 0.78 0.970055
Target:  5'- -cGUaUAUAGCUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 165977 0.7 0.999963
Target:  5'- uUUGUaUAUGGCUUauGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 164876 0.66 1
Target:  5'- ----aUAUAGCUUaaGUGUUAAAGGGa -3'
miRNA:   3'- aacaaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 162779 0.76 0.991436
Target:  5'- gUGUgaauaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aACAa----GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 162687 0.66 1
Target:  5'- gUGgugUCAUcGCUUaaaGGG-GUUAAAGGGu -3'
miRNA:   3'- aACa--AGUAuCGAA---CCCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 162629 0.79 0.946145
Target:  5'- uUUGUaUAUAGCUUGGGUGUUAAc--- -3'
miRNA:   3'- -AACAaGUAUCGAACCCACAAUUuucc -5'
28292 5' -43.3 NC_005902.1 + 162430 0.69 0.999993
Target:  5'- uUUGUgugUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAa--GUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 157890 0.69 0.99999
Target:  5'- ----aUAUAGCUUaGGUGUUAAAAGa -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 156822 0.71 0.999796
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 156585 0.77 0.981009
Target:  5'- cUUGUUUAUAuauaaUUUGGGUGUUAAAGGGu -3'
miRNA:   3'- -AACAAGUAUc----GAACCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 154951 1.1 0.052248
Target:  5'- cUUGUUCAUAGCUUGGGUGUUAAAAGGu -3'
miRNA:   3'- -AACAAGUAUCGAACCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 154623 0.66 1
Target:  5'- uUUGUaUAUAGCUUaGGUaUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCAcAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 149241 0.71 0.999881
Target:  5'- cUGUgUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- aACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 146942 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 146770 0.72 0.999663
Target:  5'- ----aCAUGGUUUaGGUGUUAGAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 145072 0.66 1
Target:  5'- gUGUaUAUAGCUUaGGUaUUAAAGGGu -3'
miRNA:   3'- aACAaGUAUCGAAcCCAcAAUUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.