Results 1 - 20 of 358 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28296 | 5' | -38 | NC_005902.1 | + | 173214 | 1.12 | 0.169592 |
Target: 5'- uAUAUAUAUAACUUAGGAGUUAAAGGGu -3' miRNA: 3'- -UAUAUAUAUUGAAUCCUCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 104205 | 0.94 | 0.786642 |
Target: 5'- --uUAUAUAGCUUAGGuGUUAAAGGGu -3' miRNA: 3'- uauAUAUAUUGAAUCCuCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 5690 | 0.93 | 0.836227 |
Target: 5'- uUGUAUAUAGCUUAGGGGUUAAAGa- -3' miRNA: 3'- uAUAUAUAUUGAAUCCUCAAUUUCcc -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 7677 | 0.66 | 1 |
Target: 5'- uUGUAUAUAGCUUAGG---UAGAGu- -3' miRNA: 3'- uAUAUAUAUUGAAUCCucaAUUUCcc -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 54375 | 1.02 | 0.429827 |
Target: 5'- uGUAUGUAUAGCUUAGGuGUUAAAGGGu -3' miRNA: 3'- -UAUAUAUAUUGAAUCCuCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 87103 | 1.02 | 0.460815 |
Target: 5'- --uUAUAUAGCUUAGGGGUUAAAGGGu -3' miRNA: 3'- uauAUAUAUUGAAUCCUCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 97476 | 1 | 0.514927 |
Target: 5'- uUGUAUAUAACUUAGGuGUUAAAGGGu -3' miRNA: 3'- uAUAUAUAUUGAAUCCuCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 125574 | 1 | 0.514927 |
Target: 5'- uUAUAUAUAGCUUAGGuGUUAAAGGGu -3' miRNA: 3'- uAUAUAUAUUGAAUCCuCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 20153 | 0.98 | 0.606078 |
Target: 5'- -cGUAUAUAGCUUAGGuGUUAAAGGGu -3' miRNA: 3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 96036 | 0.97 | 0.64094 |
Target: 5'- -cAUAUAUAACUUAGGuGUUAAAGGGu -3' miRNA: 3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 13225 | 0.97 | 0.64094 |
Target: 5'- -cAUAUAUAGCUUAGGuGUUAAAGGGu -3' miRNA: 3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 80777 | 0.98 | 0.594493 |
Target: 5'- -gGUAUAUAGCUUAGGuGUUAAAGGGu -3' miRNA: 3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 136087 | 1.1 | 0.195599 |
Target: 5'- uUGUAUAUAGCUUAGGAGUUAAAGGGu -3' miRNA: 3'- uAUAUAUAUUGAAUCCUCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 16918 | 0.97 | 0.64094 |
Target: 5'- -aAUAUAUAGCUUAGGuGUUAAAGGGu -3' miRNA: 3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 67032 | 1.08 | 0.244428 |
Target: 5'- -aGUAUAUAGCUUAGGAGUUAAAGGGu -3' miRNA: 3'- uaUAUAUAUUGAAUCCUCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 167291 | 1 | 0.514927 |
Target: 5'- uUGUAUAUAACUUAGGuGUUAAAGGGu -3' miRNA: 3'- uAUAUAUAUUGAAUCCuCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 76245 | 0.97 | 0.64094 |
Target: 5'- -aAUAUAUAACUUAGGuGUUAAAGGGu -3' miRNA: 3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 39306 | 0.94 | 0.796968 |
Target: 5'- uUGUAUAUAGCUUAGGuGUUAAAGGa -3' miRNA: 3'- uAUAUAUAUUGAAUCCuCAAUUUCCc -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 122804 | 1.06 | 0.310997 |
Target: 5'- -aGUAUAUAGCUUAGGGGUUAAAGGGu -3' miRNA: 3'- uaUAUAUAUUGAAUCCUCAAUUUCCC- -5' |
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28296 | 5' | -38 | NC_005902.1 | + | 28812 | 1 | 0.514927 |
Target: 5'- uUGUAUAUAGCUUAGGuGUUAAAGGGu -3' miRNA: 3'- uAUAUAUAUUGAAUCCuCAAUUUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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