miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 5' -38 NC_005902.1 + 12861 1.12 0.164777
Target:  5'- cGUGUAUAUAACUUAGGAGUUAAGGGGu -3'
miRNA:   3'- -UAUAUAUAUUGAAUCCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 173214 1.12 0.169592
Target:  5'- uAUAUAUAUAACUUAGGAGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUAUUGAAUCCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 136087 1.1 0.195599
Target:  5'- uUGUAUAUAGCUUAGGAGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUCCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 49995 1.08 0.244427
Target:  5'- -aGUAUAUAGCUUAGGAGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 67032 1.08 0.244428
Target:  5'- -aGUAUAUAGCUUAGGAGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 122804 1.06 0.310997
Target:  5'- -aGUAUAUAGCUUAGGGGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 138803 1.02 0.429826
Target:  5'- uGUGUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 54375 1.02 0.429827
Target:  5'- uGUAUGUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 87103 1.02 0.460815
Target:  5'- --uUAUAUAGCUUAGGGGUUAAAGGGu -3'
miRNA:   3'- uauAUAUAUUGAAUCCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 94182 1 0.514926
Target:  5'- uUGUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 97476 1 0.514927
Target:  5'- uUGUAUAUAACUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 125574 1 0.514927
Target:  5'- uUAUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 28812 1 0.514927
Target:  5'- uUGUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 167291 1 0.514927
Target:  5'- uUGUAUAUAACUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 135829 1 0.526066
Target:  5'- cUAUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 4815 1 0.537295
Target:  5'- -aGUAUAUAACUUAGGAGUUAAAGGc -3'
miRNA:   3'- uaUAUAUAUUGAAUCCUCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 23652 1 0.548606
Target:  5'- -aGUAUGUAGCUUAGGuGUUAAAGGGa -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 18886 1 0.548606
Target:  5'- -aGUAUAUAGCUUAGGuGUUAAAGGGa -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 172858 0.98 0.594492
Target:  5'- -gGUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 80777 0.98 0.594493
Target:  5'- -gGUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.