miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 5' -38 NC_005902.1 + 1177 0.91 0.887758
Target:  5'- cAUAUAUAcAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUaUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 1291 0.7 1
Target:  5'- aGUAUAUAUAGCUcAGGuGUU--AGGa -3'
miRNA:   3'- -UAUAUAUAUUGAaUCCuCAAuuUCCc -5'
28296 5' -38 NC_005902.1 + 1525 0.66 1
Target:  5'- ---aGUAUAAgcCUUAGGAuUUAAAGGa -3'
miRNA:   3'- uauaUAUAUU--GAAUCCUcAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 1669 0.73 1
Target:  5'- cUAUAUAUAAC--GGGuguuaaaaGGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGaaUCC--------UCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 3108 0.75 1
Target:  5'- -cAUAUAUAGCUUAGGuGUUAAAa-- -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUccc -5'
28296 5' -38 NC_005902.1 + 3477 0.78 0.999953
Target:  5'- uUGUAUAUAGCUUAGGuGUUAaaaucGAGuGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUCCuCAAU-----UUC-CC- -5'
28296 5' -38 NC_005902.1 + 4652 0.69 1
Target:  5'- --uUAUAUAACUUAGGGaUUAAAGc- -3'
miRNA:   3'- uauAUAUAUUGAAUCCUcAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 4729 0.66 1
Target:  5'- ---aAUAUAuCUUAGGAa-UAAGGGGu -3'
miRNA:   3'- uauaUAUAUuGAAUCCUcaAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 4815 1 0.537295
Target:  5'- -aGUAUAUAACUUAGGAGUUAAAGGc -3'
miRNA:   3'- uaUAUAUAUUGAAUCCUCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 5159 0.66 1
Target:  5'- ---gAUAUuGCUUAGauGUUAAAGGGu -3'
miRNA:   3'- uauaUAUAuUGAAUCcuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 5421 0.82 0.998349
Target:  5'- -cAUAUAUAGCUUAGGuGUUAAAGa- -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 5690 0.93 0.836227
Target:  5'- uUGUAUAUAGCUUAGGGGUUAAAGa- -3'
miRNA:   3'- uAUAUAUAUUGAAUCCUCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 6230 0.87 0.973395
Target:  5'- -aGUAUAUAGCUUAGuuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCcuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 6343 0.88 0.95022
Target:  5'- aGUAUAUAUAGCUUAGGuuUUAAAGGa -3'
miRNA:   3'- -UAUAUAUAUUGAAUCCucAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 6567 0.66 1
Target:  5'- uAUAUAUAaaUAACUUAGGuGUUAAc--- -3'
miRNA:   3'- -UAUAUAU--AUUGAAUCCuCAAUUuccc -5'
28296 5' -38 NC_005902.1 + 7677 0.66 1
Target:  5'- uUGUAUAUAGCUUAGG---UAGAGu- -3'
miRNA:   3'- uAUAUAUAUUGAAUCCucaAUUUCcc -5'
28296 5' -38 NC_005902.1 + 8212 0.71 1
Target:  5'- uUGUAUAUAGCUUAGGcaaAGUUAAu--- -3'
miRNA:   3'- uAUAUAUAUUGAAUCC---UCAAUUuccc -5'
28296 5' -38 NC_005902.1 + 8273 0.7 1
Target:  5'- --------uGCgugAGGGGUUAAAGGGu -3'
miRNA:   3'- uauauauauUGaa-UCCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 8710 0.74 1
Target:  5'- cUAUAUAcaaauaAACUUAGGuGUUAAAGGa -3'
miRNA:   3'- uAUAUAUa-----UUGAAUCCuCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 10106 0.84 0.994111
Target:  5'- -----gAUAcCUUAGGAGUUAAAGGGu -3'
miRNA:   3'- uauauaUAUuGAAUCCUCAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.