miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 5' -38 NC_005902.1 + 11449 0.75 1
Target:  5'- -cGUAUAUAGCUUAGGuGUUAAcucGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUu--CCc -5'
28296 5' -38 NC_005902.1 + 12849 0.67 1
Target:  5'- -----gAUGAUgu-GGAGUUAAAGGa -3'
miRNA:   3'- uauauaUAUUGaauCCUCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 12861 1.12 0.164777
Target:  5'- cGUGUAUAUAACUUAGGAGUUAAGGGGu -3'
miRNA:   3'- -UAUAUAUAUUGAAUCCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 13225 0.97 0.64094
Target:  5'- -cAUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 13316 0.66 1
Target:  5'- -cAUAUAUAACUUAGGuauuauaaAGUUAaccccuAAGGc -3'
miRNA:   3'- uaUAUAUAUUGAAUCC--------UCAAU------UUCCc -5'
28296 5' -38 NC_005902.1 + 13436 0.81 0.999304
Target:  5'- -aGUAUAUAGCUUAaGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUcCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 13752 0.73 1
Target:  5'- -gGUGUuuauUAACUgUAGGAGUUuaucaAAAGGGg -3'
miRNA:   3'- uaUAUAu---AUUGA-AUCCUCAA-----UUUCCC- -5'
28296 5' -38 NC_005902.1 + 15191 0.79 0.999914
Target:  5'- uUGUAUAUAGCUUAcauGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUccuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 15340 0.82 0.998349
Target:  5'- -cAUAUAUAGCUUAGGuGUUAAAGa- -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 15507 0.71 1
Target:  5'- uGUAUAUAUAGUUUAGGuGUUAAAaGGu -3'
miRNA:   3'- -UAUAUAUAUUGAAUCCuCAAUUUcCC- -5'
28296 5' -38 NC_005902.1 + 15975 0.67 1
Target:  5'- -----gAUGAUgu-GGAGUUAAAGGa -3'
miRNA:   3'- uauauaUAUUGaauCCUCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 16060 0.7 1
Target:  5'- -aAUAUAUAGCUUAGa---UAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCcucaAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 16530 0.72 1
Target:  5'- -gAUAUAUAGCUcAGGuGUUAAAGa- -3'
miRNA:   3'- uaUAUAUAUUGAaUCCuCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 16599 0.7 1
Target:  5'- -aAUAUAcAGCUUAaGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUaUUGAAUcCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 16918 0.97 0.64094
Target:  5'- -aAUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 17681 0.66 1
Target:  5'- --uUAUAUAAgcCUUAGGGuUUAAAGGa -3'
miRNA:   3'- uauAUAUAUU--GAAUCCUcAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 18607 0.86 0.979002
Target:  5'- --uUAUAUAACUUAGGAGUUAaaAAGGu -3'
miRNA:   3'- uauAUAUAUUGAAUCCUCAAU--UUCCc -5'
28296 5' -38 NC_005902.1 + 18792 0.75 1
Target:  5'- -aAUAUAUAACUUAGGuGUUAAAa-- -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUccc -5'
28296 5' -38 NC_005902.1 + 18886 1 0.548606
Target:  5'- -aGUAUAUAGCUUAGGuGUUAAAGGGa -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 19912 0.74 1
Target:  5'- cAUGUAUAUAGCUUA--AGUauUAAAGGGu -3'
miRNA:   3'- -UAUAUAUAUUGAAUccUCA--AUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.