miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 5' -38 NC_005902.1 + 107964 0.66 1
Target:  5'- -cAUAUAUAGCUUAaGGGUUAAAa-- -3'
miRNA:   3'- uaUAUAUAUUGAAUcCUCAAUUUccc -5'
28296 5' -38 NC_005902.1 + 5159 0.66 1
Target:  5'- ---gAUAUuGCUUAGauGUUAAAGGGu -3'
miRNA:   3'- uauaUAUAuUGAAUCcuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 117106 0.66 1
Target:  5'- uUGUAUAUAGCUUAaGuGUUAAAaGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUcCuCAAUUUcCC- -5'
28296 5' -38 NC_005902.1 + 104186 0.66 1
Target:  5'- -----aAUAACgccuUAGGAGUUAAAGa- -3'
miRNA:   3'- uauauaUAUUGa---AUCCUCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 97749 0.66 1
Target:  5'- ---cAUAUAGCUUAGGuGUUAAu--- -3'
miRNA:   3'- uauaUAUAUUGAAUCCuCAAUUuccc -5'
28296 5' -38 NC_005902.1 + 17681 0.66 1
Target:  5'- --uUAUAUAAgcCUUAGGGuUUAAAGGa -3'
miRNA:   3'- uauAUAUAUU--GAAUCCUcAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 24258 0.66 1
Target:  5'- uUGUAUcaucaAUGACaccUUAGGuGUUAAAGGa -3'
miRNA:   3'- uAUAUA-----UAUUG---AAUCCuCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 46298 0.66 1
Target:  5'- ---aGUAUAAgcCUUAGGAuUUAAAGGa -3'
miRNA:   3'- uauaUAUAUU--GAAUCCUcAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 122877 0.67 1
Target:  5'- -----gAUGcCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- uauauaUAUuGAAUCCUcAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 107830 0.67 1
Target:  5'- -cGUAUAUAGCUUAGauGUUAAAGa- -3'
miRNA:   3'- uaUAUAUAUUGAAUCcuCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 61540 0.67 1
Target:  5'- cUAUAUAUGagcaucguugacaauGcCUUAGGAGU--GGGGGu -3'
miRNA:   3'- uAUAUAUAU---------------U-GAAUCCUCAauUUCCC- -5'
28296 5' -38 NC_005902.1 + 137971 0.67 1
Target:  5'- -----gAUGcCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- uauauaUAUuGAAUCCUcAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 139903 0.67 1
Target:  5'- -----aAUAuCUUAGGAGUUAAAGu- -3'
miRNA:   3'- uauauaUAUuGAAUCCUCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 15975 0.67 1
Target:  5'- -----gAUGAUgu-GGAGUUAAAGGa -3'
miRNA:   3'- uauauaUAUUGaauCCUCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 51715 0.67 1
Target:  5'- uUGUAUAU-GCUUAaauGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAuUGAAUccuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 100015 0.67 1
Target:  5'- uAUAUaAUAUAGCUUAGGuGUUAAu--- -3'
miRNA:   3'- -UAUA-UAUAUUGAAUCCuCAAUUuccc -5'
28296 5' -38 NC_005902.1 + 75864 0.67 1
Target:  5'- uUAUAUucugacaAUGcCUUAGGAaUUAAAGGGu -3'
miRNA:   3'- uAUAUA-------UAUuGAAUCCUcAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 24083 0.67 1
Target:  5'- uAUGUGUuauuaacgAUGcCUUAGGAGUUAAAGu- -3'
miRNA:   3'- -UAUAUA--------UAUuGAAUCCUCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 48204 0.67 1
Target:  5'- -cAUcgAUGACgccuUAGGAGcUAAAGGa -3'
miRNA:   3'- uaUAuaUAUUGa---AUCCUCaAUUUCCc -5'
28296 5' -38 NC_005902.1 + 85935 0.67 1
Target:  5'- uAUAUaAUAUAGCUUAGGuGUUAAu--- -3'
miRNA:   3'- -UAUA-UAUAUUGAAUCCuCAAUUuccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.