miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 5' -38 NC_005902.1 + 20153 0.98 0.606078
Target:  5'- -cGUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 49473 0.98 0.606078
Target:  5'- -aGUAUAUAACUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 57268 0.98 0.606078
Target:  5'- -aGUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 86485 0.98 0.606078
Target:  5'- -aGUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 131171 0.98 0.606078
Target:  5'- -aGUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 151227 0.98 0.606078
Target:  5'- -aGUAUAUAACUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 42267 0.98 0.606078
Target:  5'- -aGUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 13225 0.97 0.64094
Target:  5'- -cAUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 76245 0.97 0.64094
Target:  5'- -aAUAUAUAACUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 96036 0.97 0.64094
Target:  5'- -cAUAUAUAACUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 162784 0.97 0.64094
Target:  5'- -aAUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 88865 0.97 0.64094
Target:  5'- -cAUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 16918 0.97 0.64094
Target:  5'- -aAUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 110217 0.97 0.675719
Target:  5'- aGUAUAUAUAAUUUAGGuGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 73969 0.95 0.765465
Target:  5'- uUAUAUAUGAUUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 77182 0.95 0.765465
Target:  5'- uUAUAUAUAAUUUAGGuGUUGAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 55156 0.95 0.765465
Target:  5'- uGUGUAUAUAGCUUGaGAGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUAUUGAAUcCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 104205 0.94 0.786642
Target:  5'- --uUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uauAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 39306 0.94 0.796968
Target:  5'- uUGUAUAUAGCUUAGGuGUUAAAGGa -3'
miRNA:   3'- uAUAUAUAUUGAAUCCuCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 156590 0.93 0.807102
Target:  5'- uUAUAUAUAAUUUGGGuGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUCCuCAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.