miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28296 5' -38 NC_005902.1 + 184894 0.8 0.999847
Target:  5'- uUGUAUAcAGCUUAGGucUUAAAGGGu -3'
miRNA:   3'- uAUAUAUaUUGAAUCCucAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 184840 0.75 1
Target:  5'- uUGUAUAUAACUUAGGuGUUAAc--- -3'
miRNA:   3'- uAUAUAUAUUGAAUCCuCAAUUuccc -5'
28296 5' -38 NC_005902.1 + 184778 0.75 1
Target:  5'- uUAUAUAUAGCcUAGGuGUUGAAGa- -3'
miRNA:   3'- uAUAUAUAUUGaAUCCuCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 184631 0.88 0.954792
Target:  5'- -cGUAUAUAGCUUAGGGGUUAaaAAGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCUCAAU--UUCCc -5'
28296 5' -38 NC_005902.1 + 184559 0.72 1
Target:  5'- ---cAUAUAAgcCUUAGGAuUUAAAGGGu -3'
miRNA:   3'- uauaUAUAUU--GAAUCCUcAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 182964 0.8 0.999799
Target:  5'- uGUAUAUAUAGCUUAGGuGUUAAAu-- -3'
miRNA:   3'- -UAUAUAUAUUGAAUCCuCAAUUUccc -5'
28296 5' -38 NC_005902.1 + 182662 0.7 1
Target:  5'- uGUAUGUAUAGCUUAGGuGUa------ -3'
miRNA:   3'- -UAUAUAUAUUGAAUCCuCAauuuccc -5'
28296 5' -38 NC_005902.1 + 181431 0.66 1
Target:  5'- -aGUAUAUcGCUUAGauGUUAAAGGa -3'
miRNA:   3'- uaUAUAUAuUGAAUCcuCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 181143 0.69 1
Target:  5'- --cUGUAauGCUUuGaGAGUUAAAGGGu -3'
miRNA:   3'- uauAUAUauUGAAuC-CUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 180988 0.77 0.999996
Target:  5'- -aGUAUcauUGACaacgcuUUAGGAGUUAAAGGGc -3'
miRNA:   3'- uaUAUAu--AUUG------AAUCCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 180393 0.77 0.999994
Target:  5'- -aGUAUAUAGCUUAauuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUccuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 179726 0.81 0.999127
Target:  5'- uUGUAUAUGGCUUAGGucuuaaAGaUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUCC------UC-AAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 178441 0.92 0.854466
Target:  5'- -aGUAUAUAAUUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 173498 0.81 0.999127
Target:  5'- uUGUAUAUAAUUUAGGuaUUAAAGGGu -3'
miRNA:   3'- uAUAUAUAUUGAAUCCucAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 173214 1.12 0.169592
Target:  5'- uAUAUAUAUAACUUAGGAGUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUAUUGAAUCCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 172858 0.98 0.594492
Target:  5'- -gGUAUAUAGCUUAGGuGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUAUUGAAUCCuCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 171271 0.69 1
Target:  5'- -aAUGUGUuauuauuagcaacAugUUuGGGGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUA-------------UugAAuCCUCAAUUUCCC- -5'
28296 5' -38 NC_005902.1 + 170617 0.85 0.989163
Target:  5'- uUAUAUAUAGCUUAGGuGUUAAAGa- -3'
miRNA:   3'- uAUAUAUAUUGAAUCCuCAAUUUCcc -5'
28296 5' -38 NC_005902.1 + 170243 0.76 0.999997
Target:  5'- -----aAUGcCUUAGGAGUUAAAGGa -3'
miRNA:   3'- uauauaUAUuGAAUCCUCAAUUUCCc -5'
28296 5' -38 NC_005902.1 + 169917 0.7 1
Target:  5'- -aAUAUAUcaccgacGACguguuuGGGGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUA-------UUGaau---CCUCAAUUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.