Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28301 | 3' | -43.2 | NC_005905.1 | + | 21757 | 0.67 | 0.99999 |
Target: 5'- uUCGACGuGUUcag-CGAGUaUAGGCCg -3' miRNA: 3'- -AGCUGUuUAAaauaGCUCAgGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 17880 | 0.67 | 0.999985 |
Target: 5'- aCGAUuaggUUUAUCGAGUUUAGcucggcuuguGCCg -3' miRNA: 3'- aGCUGuuuaAAAUAGCUCAGGUC----------UGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 81011 | 0.67 | 0.999971 |
Target: 5'- aUGGCAAAUggaUAUCGuGUCC--ACCa -3' miRNA: 3'- aGCUGUUUAaa-AUAGCuCAGGucUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 84944 | 0.68 | 0.999958 |
Target: 5'- uUCGAUGuuauacaagUUGUCGAcaaCCAGACCa -3' miRNA: 3'- -AGCUGUuuaa-----AAUAGCUca-GGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 17877 | 0.68 | 0.999883 |
Target: 5'- cCGGCuuaaac---CGAGUUCAGGCCg -3' miRNA: 3'- aGCUGuuuaaaauaGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 19651 | 0.72 | 0.995548 |
Target: 5'- cUCGAUAAAaUUUGUCGAGgcuagCUuGGCCc -3' miRNA: 3'- -AGCUGUUUaAAAUAGCUCa----GGuCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 17918 | 0.72 | 0.994739 |
Target: 5'- uUUGACGAGUUUUAcauAGUCUAGGCUg -3' miRNA: 3'- -AGCUGUUUAAAAUagcUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 49198 | 0.73 | 0.993815 |
Target: 5'- cUCGAUAuAUUUUAUCaaaUCUAGACCg -3' miRNA: 3'- -AGCUGUuUAAAAUAGcucAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 49423 | 0.73 | 0.993815 |
Target: 5'- cUCGAUAuAUUUUAUCaaaUCUAGACCg -3' miRNA: 3'- -AGCUGUuUAAAAUAGcucAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 49063 | 0.73 | 0.993815 |
Target: 5'- cUCGAUAuAUUUUAUCaaaUCUAGACCg -3' miRNA: 3'- -AGCUGUuUAAAAUAGcucAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 22198 | 0.73 | 0.992765 |
Target: 5'- aUGucCAAAUUUUAUCuAGcCCAGGCCg -3' miRNA: 3'- aGCu-GUUUAAAAUAGcUCaGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 17397 | 0.74 | 0.986535 |
Target: 5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUUCAGcCCg -3' miRNA: 3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCuGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 17507 | 0.74 | 0.986535 |
Target: 5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUUCAGcCCg -3' miRNA: 3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCuGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 17442 | 0.75 | 0.972767 |
Target: 5'- uUUGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3' miRNA: 3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 17552 | 0.75 | 0.972767 |
Target: 5'- uUUGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3' miRNA: 3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 17332 | 0.75 | 0.972767 |
Target: 5'- uUUGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3' miRNA: 3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 19709 | 0.77 | 0.943119 |
Target: 5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUCCAGGUCg -3' miRNA: 3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 20104 | 0.77 | 0.943119 |
Target: 5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUCCAGGUCg -3' miRNA: 3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 8059 | 0.78 | 0.915781 |
Target: 5'- uUCGACGuugucGAUUgUAUCGAGUUCAGAUUu -3' miRNA: 3'- -AGCUGU-----UUAAaAUAGCUCAGGUCUGG- -5' |
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28301 | 3' | -43.2 | NC_005905.1 | + | 49522 | 0.78 | 0.902127 |
Target: 5'- aUGACAAcaaugcaaaauAUUUUAUCaAGUCUAGACCg -3' miRNA: 3'- aGCUGUU-----------UAAAAUAGcUCAGGUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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