miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 3' -43.2 NC_005905.1 + 21757 0.67 0.99999
Target:  5'- uUCGACGuGUUcag-CGAGUaUAGGCCg -3'
miRNA:   3'- -AGCUGUuUAAaauaGCUCAgGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17167 0.82 0.744505
Target:  5'- cUCGAUAAGauaagauuaugUUUAUCGAGUCCAGcCCg -3'
miRNA:   3'- -AGCUGUUUa----------AAAUAGCUCAGGUCuGG- -5'
28301 3' -43.2 NC_005905.1 + 49108 0.86 0.5512
Target:  5'- cUCGAUAuAUUUUAUCaAGUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 20039 1.17 0.012743
Target:  5'- uUCGACAAAUUUUAUCGAGUCCAGACCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 49423 0.73 0.993815
Target:  5'- cUCGAUAuAUUUUAUCaaaUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcucAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 22198 0.73 0.992765
Target:  5'- aUGucCAAAUUUUAUCuAGcCCAGGCCg -3'
miRNA:   3'- aGCu-GUUUAAAAUAGcUCaGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17507 0.74 0.986535
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUUCAGcCCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCuGG- -5'
28301 3' -43.2 NC_005905.1 + 17332 0.75 0.972767
Target:  5'- uUUGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3'
miRNA:   3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 19709 0.77 0.943119
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUCCAGGUCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17606 0.82 0.766079
Target:  5'- cUCGAUAGAUaagauuaggUUUAUCGAGUUCAGcCCg -3'
miRNA:   3'- -AGCUGUUUA---------AAAUAGCUCAGGUCuGG- -5'
28301 3' -43.2 NC_005905.1 + 49522 0.78 0.902127
Target:  5'- aUGACAAcaaugcaaaauAUUUUAUCaAGUCUAGACCg -3'
miRNA:   3'- aGCUGUU-----------UAAAAUAGcUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17552 0.75 0.972767
Target:  5'- uUUGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3'
miRNA:   3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 17880 0.67 0.999985
Target:  5'- aCGAUuaggUUUAUCGAGUUUAGcucggcuuguGCCg -3'
miRNA:   3'- aGCUGuuuaAAAUAGCUCAGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 17222 0.8 0.845335
Target:  5'- uUCGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3'
miRNA:   3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 49063 0.73 0.993815
Target:  5'- cUCGAUAuAUUUUAUCaaaUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcucAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17442 0.75 0.972767
Target:  5'- uUUGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3'
miRNA:   3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 17287 0.81 0.823909
Target:  5'- uUCGACAaaucucGAUgagauaagauuaugUUUAUCGAGUCCAGcCCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCuGG- -5'
28301 3' -43.2 NC_005905.1 + 20208 0.84 0.665756
Target:  5'- --uGCAAucagcgUAUCGAGUCCAGACCg -3'
miRNA:   3'- agcUGUUuaaa--AUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 49198 0.73 0.993815
Target:  5'- cUCGAUAuAUUUUAUCaaaUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcucAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17397 0.74 0.986535
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUUCAGcCCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.