miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 5' -40.6 NC_005905.1 + 11115 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11180 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11245 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11310 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11375 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11440 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11505 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11570 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11635 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11700 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 11765 0.9 0.530779
Target:  5'- gCCAAGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17907 0.89 0.565765
Target:  5'- gUCAAGUUAGCUUUGACGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 8920 0.89 0.565765
Target:  5'- -aGAGUUAGCUUCGACAAAUUUUAc- -3'
miRNA:   3'- ggUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 19830 0.89 0.589421
Target:  5'- gCCAAGUUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 21779 0.88 0.613246
Target:  5'- gCCAAGUUAGCUUCGACGAAgcu--UCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUaaaauAG- -5'
28301 5' -40.6 NC_005905.1 + 8589 0.84 0.79766
Target:  5'- aCCGAuuUAGCUUCGACAAAUUUUAc- -3'
miRNA:   3'- -GGUUcgAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 10758 0.83 0.874092
Target:  5'- -uGAGUUAGCUUCGACGAAa-UUAUCa -3'
miRNA:   3'- ggUUCGAUCGAAGCUGUUUaaAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 11050 0.81 0.925839
Target:  5'- aCCAcGCUAGCUUCGAUAAAUc----- -3'
miRNA:   3'- -GGUuCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17188 0.8 0.937727
Target:  5'- gCCAAGCUAGCUUCaACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGcUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17912 0.8 0.943183
Target:  5'- gCCAAGCUAGCUcUGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAaGCUGUUUAaaauag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.