miRNA display CGI


Results 21 - 40 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 5' -40.6 NC_005905.1 + 21959 0.99 0.209326
Target:  5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 17757 0.96 0.309392
Target:  5'- aCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17627 0.96 0.309392
Target:  5'- aCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17453 0.95 0.326348
Target:  5'- gCCGAGUUAGCUUUGACAAAUUUgAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAaUAG- -5'
28301 5' -40.6 NC_005905.1 + 17563 0.95 0.326348
Target:  5'- gCCGAGUUAGCUUUGACAAAUUUgAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAaUAG- -5'
28301 5' -40.6 NC_005905.1 + 8853 0.95 0.326348
Target:  5'- gCCAAGCUAGCUUCGACAGAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17343 0.95 0.326348
Target:  5'- gCCGAGUUAGCUUUGACAAAUUUgAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAaUAG- -5'
28301 5' -40.6 NC_005905.1 + 20115 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 8634 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17692 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17518 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17298 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17408 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 19940 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 19566 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 19720 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 8963 0.93 0.400903
Target:  5'- gCCAAGCUAGCUUCGACAAAc------ -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUaaaauag -5'
28301 5' -40.6 NC_005905.1 + 11830 0.92 0.46347
Target:  5'- gCCAAGCUAGCUUCGAUAAGUacgggUGUUg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaa---AUAG- -5'
28301 5' -40.6 NC_005905.1 + 20175 0.91 0.489895
Target:  5'- gCCAAGCUAGCcUCGACAAAUcucgauaagauuaggUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGaAGCUGUUUA---------------AAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 8744 0.91 0.489895
Target:  5'- gCCAAGCUAGCUUCGACAaucucaaugagauaaGAUuaggUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGU---------------UUA----AAAUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.