Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 11440 | 0.9 | 0.530779 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 11505 | 0.9 | 0.530779 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 11570 | 0.9 | 0.530779 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 11635 | 0.9 | 0.530779 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 11700 | 0.9 | 0.530779 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 11765 | 0.9 | 0.530779 |
Target: 5'- gCCAAGCUAGCUUCGAUAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 11830 | 0.92 | 0.46347 |
Target: 5'- gCCAAGCUAGCUUCGAUAAGUacgggUGUUg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaa---AUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 14666 | 0.66 | 1 |
Target: 5'- gCCGAGCaGGCUuuaUCGaACGAAUUg---- -3' miRNA: 3'- -GGUUCGaUCGA---AGC-UGUUUAAaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 15447 | 0.66 | 1 |
Target: 5'- gCAAGCUGGCgaagcccuaCGACAGGcaugUAUUg -3' miRNA: 3'- gGUUCGAUCGaa-------GCUGUUUaaa-AUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17042 | 0.66 | 1 |
Target: 5'- gCCGGGCUGGacUCGAUAAAcauaaucUUAUCu -3' miRNA: 3'- -GGUUCGAUCgaAGCUGUUUaa-----AAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17102 | 0.66 | 1 |
Target: 5'- cCCAAGCcaaccUGGUcUCGAuCAAAU-UUGUCg -3' miRNA: 3'- -GGUUCG-----AUCGaAGCU-GUUUAaAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17147 | 0.68 | 1 |
Target: 5'- cCCAAGCcgGGCUggacUCGAUAAAcauaaucUUAUCu -3' miRNA: 3'- -GGUUCGa-UCGA----AGCUGUUUaa-----AAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17188 | 0.8 | 0.937727 |
Target: 5'- gCCAAGCUAGCUUCaACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGcUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17212 | 0.66 | 1 |
Target: 5'- cCCAAGCcaaccUGGUcUCGAuCAAAU-UUGUCa -3' miRNA: 3'- -GGUUCG-----AUCGaAGCU-GUUUAaAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17233 | 1 | 0.180979 |
Target: 5'- gCCGAGUUAGCUUCGACAAAUUUgAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAaUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17298 | 0.95 | 0.335082 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17322 | 0.66 | 1 |
Target: 5'- cCCAAGCcaaccUGGUcUCGAuCAAAU-UUGUCa -3' miRNA: 3'- -GGUUCG-----AUCGaAGCU-GUUUAaAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17343 | 0.95 | 0.326348 |
Target: 5'- gCCGAGUUAGCUUUGACAAAUUUgAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAaUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17408 | 0.95 | 0.335082 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 17432 | 0.66 | 1 |
Target: 5'- cCCAAGCcaaccUGGUcUCGAuCAAAU-UUGUCa -3' miRNA: 3'- -GGUUCG-----AUCGaAGCU-GUUUAaAAUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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