Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 21824 | 1 | 0.175734 |
Target: 5'- aCCAAGUUAGCUUCGACAAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 21779 | 0.88 | 0.613246 |
Target: 5'- gCCAAGUUAGCUUCGACGAAgcu--UCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUaaaauAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 20175 | 0.91 | 0.489895 |
Target: 5'- gCCAAGCUAGCcUCGACAAAUcucgauaagauuaggUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGaAGCUGUUUA---------------AAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 20115 | 0.95 | 0.335082 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 20050 | 1.16 | 0.023105 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 20005 | 0.99 | 0.203366 |
Target: 5'- gCCAAGCUAGCUUCGACAAA---UAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUaaaAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19940 | 0.95 | 0.335082 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19920 | 0.71 | 0.99987 |
Target: 5'- cCCAAGCcGGuCUggacUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUCGaUC-GA----AGCUGUUUaAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19875 | 1.16 | 0.023105 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19830 | 0.89 | 0.589421 |
Target: 5'- gCCAAGUUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19765 | 1.06 | 0.084786 |
Target: 5'- gCCAAGCUAGCcUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGaAGCUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19745 | 0.71 | 0.99987 |
Target: 5'- cCCAAGCcGGuCUggacUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUCGaUC-GA----AGCUGUUUaAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19720 | 0.95 | 0.335082 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19655 | 1.16 | 0.023105 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19635 | 0.74 | 0.998739 |
Target: 5'- cCCAAGCcGGCcuggacUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUCGaUCGa-----AGCUGUUUaAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19610 | 1 | 0.175734 |
Target: 5'- gCCAAGCUAGCUUC-ACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGcUGUUUAAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19566 | 0.95 | 0.335082 |
Target: 5'- gCCAAGCUAGCUUCGACAAAUc----- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19525 | 0.71 | 0.99987 |
Target: 5'- cCCAAGCcGGuCUggacUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUCGaUC-GA----AGCUGUUUaAAAUAG- -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19501 | 0.7 | 0.999962 |
Target: 5'- aCCAAGCUAGCcUgGAUAAAa------ -3' miRNA: 3'- -GGUUCGAUCGaAgCUGUUUaaaauag -5' |
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28301 | 5' | -40.6 | NC_005905.1 | + | 19480 | 0.8 | 0.948318 |
Target: 5'- cCCAAGCcGGCUuggacUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUCGaUCGA-----AGCUGUUUaAAAUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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