Results 1 - 20 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 61112 | 0.71 | 0.999903 |
Target: 5'- aCAuauAGCaauaGGCUUCGGCGAugUUUAUCa -3' miRNA: 3'- gGU---UCGa---UCGAAGCUGUUuaAAAUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 49437 | 0.67 | 1 |
Target: 5'- -uGAGCcgaccgAGCcUCGAUAuAUUUUAUCa -3' miRNA: 3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 49392 | 0.67 | 1 |
Target: 5'- -uGAGCcgaccgAGCcUCGAUAuAUUUUAUCa -3' miRNA: 3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 49302 | 0.67 | 1 |
Target: 5'- -uGAGCcgaccgAGCcUCGAUAuAUUUUAUCa -3' miRNA: 3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 49257 | 0.67 | 1 |
Target: 5'- -uGAGCcaaccgAGCcUCGAUAuAUUUUAUCa -3' miRNA: 3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 49212 | 0.67 | 1 |
Target: 5'- -uGAGCcaaccgAGCcUCGAUAuAUUUUAUCa -3' miRNA: 3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 49167 | 0.67 | 1 |
Target: 5'- -uGAGCcgaccgAGCcUCGAUAuAUUUUAUCa -3' miRNA: 3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 49122 | 0.67 | 1 |
Target: 5'- -uGAGCcaaccgAGCcUCGAUAuAUUUUAUCa -3' miRNA: 3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 49077 | 0.67 | 1 |
Target: 5'- -uGAGCcaaccgAGCcUCGAUAuAUUUUAUCa -3' miRNA: 3'- ggUUCGa-----UCGaAGCUGUuUAAAAUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 34905 | 0.66 | 1 |
Target: 5'- aCGAGUgAGUgUCGACGAAUUUa--- -3' miRNA: 3'- gGUUCGaUCGaAGCUGUUUAAAauag -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 22195 | 0.67 | 1 |
Target: 5'- gCCAAGCcGGUUUaaauaCGACAAAUccaggcUUGUCa -3' miRNA: 3'- -GGUUCGaUCGAA-----GCUGUUUAa-----AAUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 22179 | 0.69 | 0.999996 |
Target: 5'- cCCAGGCcGGCUUgGGuCGAAUga-GUCg -3' miRNA: 3'- -GGUUCGaUCGAAgCU-GUUUAaaaUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 22139 | 1.11 | 0.049713 |
Target: 5'- gCCAAGUUAGCUUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 22094 | 0.99 | 0.209326 |
Target: 5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 22049 | 1.11 | 0.049713 |
Target: 5'- gCCAAGUUAGCUUCGACAAAUUUUAUCg -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 22004 | 1 | 0.191886 |
Target: 5'- aCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 21959 | 0.99 | 0.209326 |
Target: 5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 21924 | 0.66 | 1 |
Target: 5'- aCCGAaCUAGacUCGAUAAAaUUUGUCg -3' miRNA: 3'- -GGUUcGAUCgaAGCUGUUUaAAAUAG- -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 21914 | 0.99 | 0.209326 |
Target: 5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
|||||||
28301 | 5' | -40.6 | NC_005905.1 | + | 21869 | 0.99 | 0.209326 |
Target: 5'- gCCAAGUUAGCUUCGACGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home