miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 5' -40.6 NC_005905.1 + 17453 0.95 0.326348
Target:  5'- gCCGAGUUAGCUUUGACAAAUUUgAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAaUAG- -5'
28301 5' -40.6 NC_005905.1 + 17518 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17563 0.95 0.326348
Target:  5'- gCCGAGUUAGCUUUGACAAAUUUgAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAaUAG- -5'
28301 5' -40.6 NC_005905.1 + 17627 0.96 0.309392
Target:  5'- aCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17672 0.76 0.990623
Target:  5'- uCCAAGCcGGCcuggaUUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUCG-----AAGCUGUUUaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17692 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17717 0.74 0.998739
Target:  5'- cCCAAGCcGGCcuaaacUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUGUUUaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17757 0.96 0.309392
Target:  5'- aCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 17802 1.16 0.023105
Target:  5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17847 1.1 0.054662
Target:  5'- gCCGAGUUAGCUUCGACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 17907 0.89 0.565765
Target:  5'- gUCAAGUUAGCUUUGACGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUag -5'
28301 5' -40.6 NC_005905.1 + 17912 0.8 0.943183
Target:  5'- gCCAAGCUAGCUcUGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAaGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 19400 0.7 0.999983
Target:  5'- uCCAGGCUAGCUugguccaagccggccUgGACucgauaaaccuAAUUUUAUCu -3'
miRNA:   3'- -GGUUCGAUCGA---------------AgCUGu----------UUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19480 0.8 0.948318
Target:  5'- cCCAAGCcGGCUuggacUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUCGA-----AGCUGUUUaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19501 0.7 0.999962
Target:  5'- aCCAAGCUAGCcUgGAUAAAa------ -3'
miRNA:   3'- -GGUUCGAUCGaAgCUGUUUaaaauag -5'
28301 5' -40.6 NC_005905.1 + 19525 0.71 0.99987
Target:  5'- cCCAAGCcGGuCUggacUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUC-GA----AGCUGUUUaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19566 0.95 0.335082
Target:  5'- gCCAAGCUAGCUUCGACAAAUc----- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAaaauag -5'
28301 5' -40.6 NC_005905.1 + 19610 1 0.175734
Target:  5'- gCCAAGCUAGCUUC-ACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGcUGUUUAAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19635 0.74 0.998739
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAAaUUUGUCg -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUGUUUaAAAUAG- -5'
28301 5' -40.6 NC_005905.1 + 19655 1.16 0.023105
Target:  5'- gCCAAGCUAGCUUCGACAAAUUUUAUCg -3'
miRNA:   3'- -GGUUCGAUCGAAGCUGUUUAAAAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.