Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28302 | 3' | -59.7 | NC_005905.1 | + | 49039 | 0.66 | 0.606334 |
Target: 5'- -aCCGGCUUGaGCCGAcCgAGCUUCGg -3' miRNA: 3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17311 | 0.66 | 0.595938 |
Target: 5'- aGCUaGCUUGGcCCAAGCcaaccUGGUCUCGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCG-----AUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17201 | 0.66 | 0.595938 |
Target: 5'- aGCUaGCUUGGcCCAAGCcaaccUGGUCUCGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCG-----AUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17421 | 0.66 | 0.595938 |
Target: 5'- aGCUaGCUUGGcCCAAGCcaaccUGGUCUCGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCG-----AUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17091 | 0.66 | 0.595938 |
Target: 5'- aGCUaGCUUGGcCCAAGCcaaccUGGUCUCGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCG-----AUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17133 | 0.66 | 0.575235 |
Target: 5'- -cCCGGCUUGaGCCGAGUUAGUUaUGg -3' miRNA: 3'- ccGGCCGAACcCGGUUCGAUCGGaGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 21736 | 0.66 | 0.564944 |
Target: 5'- aGGCCGGCUUGaGCCGuugaGGUgGGUCaCGa -3' miRNA: 3'- -CCGGCCGAACcCGGU----UCGaUCGGaGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 22014 | 0.66 | 0.564944 |
Target: 5'- -uUCGGUUUGaaCCAAGUUAGCUUCGa -3' miRNA: 3'- ccGGCCGAACccGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 20077 | 0.67 | 0.534387 |
Target: 5'- aGGCUaGCUUGGcCCAAGCcGGUCUgGa -3' miRNA: 3'- -CCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 19844 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17661 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGuCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17596 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 20018 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8904 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 19779 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 19624 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17531 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGuCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 9124 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8730 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8949 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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