miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28302 3' -59.7 NC_005905.1 + 49039 0.66 0.606334
Target:  5'- -aCCGGCUUGaGCCGAcCgAGCUUCGg -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17421 0.66 0.595938
Target:  5'- aGCUaGCUUGGcCCAAGCcaaccUGGUCUCGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCG-----AUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17311 0.66 0.595938
Target:  5'- aGCUaGCUUGGcCCAAGCcaaccUGGUCUCGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCG-----AUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17091 0.66 0.595938
Target:  5'- aGCUaGCUUGGcCCAAGCcaaccUGGUCUCGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCG-----AUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17201 0.66 0.595938
Target:  5'- aGCUaGCUUGGcCCAAGCcaaccUGGUCUCGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCG-----AUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17133 0.66 0.575235
Target:  5'- -cCCGGCUUGaGCCGAGUUAGUUaUGg -3'
miRNA:   3'- ccGGCCGAACcCGGUUCGAUCGGaGC- -5'
28302 3' -59.7 NC_005905.1 + 22014 0.66 0.564944
Target:  5'- -uUCGGUUUGaaCCAAGUUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACccGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 21736 0.66 0.564944
Target:  5'- aGGCCGGCUUGaGCCGuugaGGUgGGUCaCGa -3'
miRNA:   3'- -CCGGCCGAACcCGGU----UCGaUCGGaGC- -5'
28302 3' -59.7 NC_005905.1 + 20077 0.67 0.534387
Target:  5'- aGGCUaGCUUGGcCCAAGCcGGUCUgGa -3'
miRNA:   3'- -CCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 17661 0.67 0.514343
Target:  5'- aGCUaGCUUGGuCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 8730 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 8949 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 19624 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 17596 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 17531 0.67 0.514343
Target:  5'- aGCUaGCUUGGuCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 8904 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 9124 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 20018 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 19779 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 19844 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.