miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28302 3' -59.7 NC_005905.1 + 49447 0.73 0.229104
Target:  5'- uGGaCCGGCUUGaGCCGAcCgAGCCUCGa -3'
miRNA:   3'- -CC-GGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49399 0.7 0.367964
Target:  5'- -aCCGGCUUGaGCCGAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49354 0.67 0.504435
Target:  5'- -aCCGGCUUGaGCCGAcCgAGCCUCa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGc -5'
28302 3' -59.7 NC_005905.1 + 49309 0.7 0.367964
Target:  5'- -aCCGGCUUGaGCCGAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49264 0.7 0.343865
Target:  5'- -aCCGGCUUGaGCCAAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49219 0.7 0.343865
Target:  5'- -aCCGGCUUGaGCCAAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49174 0.7 0.367964
Target:  5'- -aCCGGCUUGaGCCGAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49129 0.7 0.343865
Target:  5'- -aCCGGCUUGaGCCAAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49084 0.7 0.343865
Target:  5'- -aCCGGCUUGaGCCAAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49039 0.66 0.606334
Target:  5'- -aCCGGCUUGaGCCGAcCgAGCUUCGg -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 22176 0.7 0.343865
Target:  5'- aGGCCGGCUUGGGUCGAaUgAGUCg-- -3'
miRNA:   3'- -CCGGCCGAACCCGGUUcGaUCGGagc -5'
28302 3' -59.7 NC_005905.1 + 22151 0.82 0.059423
Target:  5'- aGGCCuGCUUuGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGcCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 22106 0.98 0.003797
Target:  5'- aGGCCGGUUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 22061 0.9 0.013922
Target:  5'- aGGCCGGCUUGaGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACcCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 22014 0.66 0.564944
Target:  5'- -uUCGGUUUGaaCCAAGUUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACccGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 21971 1.02 0.001924
Target:  5'- aGGCCGGCUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 21926 1.02 0.001924
Target:  5'- aGGCCGGCUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 21881 1.02 0.001924
Target:  5'- aGGCCGGCUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 21836 0.84 0.042654
Target:  5'- aGGCCGGCUUGaaCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACccGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 21791 0.91 0.012093
Target:  5'- aGGCCGGCUUuGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAAcCCGGUUCGAUCGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.