miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28302 3' -59.7 NC_005905.1 + 21736 0.66 0.564944
Target:  5'- aGGCCGGCUUGaGCCGuugaGGUgGGUCaCGa -3'
miRNA:   3'- -CCGGCCGAACcCGGU----UCGaUCGGaGC- -5'
28302 3' -59.7 NC_005905.1 + 20185 1.01 0.002483
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 20127 1.06 0.000975
Target:  5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 20077 0.67 0.534387
Target:  5'- aGGCUaGCUUGGcCCAAGCcGGUCUgGa -3'
miRNA:   3'- -CCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 20062 1.02 0.002095
Target:  5'- aGGUCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 20018 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 20015 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 19952 1.06 0.000975
Target:  5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 19887 1.06 0.000975
Target:  5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 19844 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 19840 0.92 0.010503
Target:  5'- -aCCGGCUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 19779 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 19777 1.11 0.000453
Target:  5'- aGGCCGGCUUGGGCCAAGCUAGCCUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 19732 1.06 0.000975
Target:  5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 19668 0.71 0.299147
Target:  5'- aGGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- -CCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 19667 0.9 0.016026
Target:  5'- aGGUCGuCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCcGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 19624 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 19620 0.94 0.008147
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGc -5'
28302 3' -59.7 NC_005905.1 + 19577 1.02 0.001979
Target:  5'- aGCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- cCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 19513 0.93 0.00965
Target:  5'- aGGCCGGCUUGGaCCAAGCUAGCCUgGa -3'
miRNA:   3'- -CCGGCCGAACCcGGUUCGAUCGGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.