miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28302 3' -59.7 NC_005905.1 + 11365 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11430 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11495 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11560 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11625 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11690 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11755 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11820 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17091 0.66 0.595938
Target:  5'- aGCUaGCUUGGcCCAAGCcaaccUGGUCUCGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCG-----AUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17133 0.66 0.575235
Target:  5'- -cCCGGCUUGaGCCGAGUUAGUUaUGg -3'
miRNA:   3'- ccGGCCGAACcCGGUUCGAUCGGaGC- -5'
28302 3' -59.7 NC_005905.1 + 17200 0.96 0.005484
Target:  5'- aGGuuGGCUUGGGCCAAGCUAGCUUCa -3'
miRNA:   3'- -CCggCCGAACCCGGUUCGAUCGGAGc -5'
28302 3' -59.7 NC_005905.1 + 17201 0.66 0.595938
Target:  5'- aGCUaGCUUGGcCCAAGCcaaccUGGUCUCGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCG-----AUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17243 0.91 0.012093
Target:  5'- -cCCGGCUUGGGCCGAGUUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17310 0.98 0.003588
Target:  5'- aGGuuGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCggCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17311 0.66 0.595938
Target:  5'- aGCUaGCUUGGcCCAAGCcaaccUGGUCUCGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCG-----AUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17353 0.77 0.130146
Target:  5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17420 0.98 0.003588
Target:  5'- aGGuuGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCggCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17421 0.66 0.595938
Target:  5'- aGCUaGCUUGGcCCAAGCcaaccUGGUCUCGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCG-----AUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17463 0.77 0.130146
Target:  5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17530 0.98 0.003588
Target:  5'- aGGuuGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCggCCGAACCCGGUUCGAUCGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.