Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28302 | 3' | -59.7 | NC_005905.1 | + | 17531 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGuCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17573 | 0.77 | 0.130146 |
Target: 5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3' miRNA: 3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17596 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17639 | 0.94 | 0.007073 |
Target: 5'- aGGCCGGCUUGGaCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCGGCCGAACCcGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17661 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGuCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17704 | 1.06 | 0.000975 |
Target: 5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17769 | 0.94 | 0.007073 |
Target: 5'- aGGCCGGCUUGGaCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCGGCCGAACCcGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17814 | 1.06 | 0.000975 |
Target: 5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17859 | 0.79 | 0.087092 |
Target: 5'- aGCuCGGCUUGuGCCGAGUUAGCUUCGa -3' miRNA: 3'- cCG-GCCGAACcCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17895 | 0.72 | 0.259063 |
Target: 5'- aGGCCGGUUUcuGUCAAGUUAGCUUUGa -3' miRNA: 3'- -CCGGCCGAAccCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17924 | 0.82 | 0.05624 |
Target: 5'- aGuCCGGUUUGGGCCAAGCUAGCUcUGa -3' miRNA: 3'- cC-GGCCGAACCCGGUUCGAUCGGaGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 19403 | 0.71 | 0.299147 |
Target: 5'- aGGCUaGCUUGGuCCAAGCcGGCCUgGa -3' miRNA: 3'- -CCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 19484 | 0.69 | 0.399244 |
Target: 5'- aGCCGGCUUGGacucgauaaaauuuGUCgAAGCUAGCUUgGc -3' miRNA: 3'- cCGGCCGAACC--------------CGG-UUCGAUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 19513 | 0.93 | 0.00965 |
Target: 5'- aGGCCGGCUUGGaCCAAGCUAGCCUgGa -3' miRNA: 3'- -CCGGCCGAACCcGGUUCGAUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 19577 | 1.02 | 0.001979 |
Target: 5'- aGCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- cCGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 19620 | 0.94 | 0.008147 |
Target: 5'- -aCCGGCUUGGGCCAAGCUAGCUUCa -3' miRNA: 3'- ccGGCCGAACCCGGUUCGAUCGGAGc -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 19624 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 19667 | 0.9 | 0.016026 |
Target: 5'- aGGUCGuCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCGGCcGAACCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 19668 | 0.71 | 0.299147 |
Target: 5'- aGGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- -CCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 19732 | 1.06 | 0.000975 |
Target: 5'- aGGCCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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