miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28302 3' -59.7 NC_005905.1 + 17769 0.94 0.007073
Target:  5'- aGGCCGGCUUGGaCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCcGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 19620 0.94 0.008147
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGc -5'
28302 3' -59.7 NC_005905.1 + 19513 0.93 0.00965
Target:  5'- aGGCCGGCUUGGaCCAAGCUAGCCUgGa -3'
miRNA:   3'- -CCGGCCGAACCcGGUUCGAUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 19840 0.92 0.010503
Target:  5'- -aCCGGCUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17243 0.91 0.012093
Target:  5'- -cCCGGCUUGGGCCGAGUUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 21791 0.91 0.012093
Target:  5'- aGGCCGGCUUuGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 22061 0.9 0.013922
Target:  5'- aGGCCGGCUUGaGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACcCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 19667 0.9 0.016026
Target:  5'- aGGUCGuCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCcGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 21836 0.84 0.042654
Target:  5'- aGGCCGGCUUGaaCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACccGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17924 0.82 0.05624
Target:  5'- aGuCCGGUUUGGGCCAAGCUAGCUcUGa -3'
miRNA:   3'- cC-GGCCGAACCCGGUUCGAUCGGaGC- -5'
28302 3' -59.7 NC_005905.1 + 22151 0.82 0.059423
Target:  5'- aGGCCuGCUUuGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGcCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8908 0.82 0.061079
Target:  5'- -cCCGGCUUGGGCaGAGUUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGgUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17859 0.79 0.087092
Target:  5'- aGCuCGGCUUGuGCCGAGUUAGCUUCGa -3'
miRNA:   3'- cCG-GCCGAACcCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17353 0.77 0.130146
Target:  5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17463 0.77 0.130146
Target:  5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17573 0.77 0.130146
Target:  5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49447 0.73 0.229104
Target:  5'- uGGaCCGGCUUGaGCCGAcCgAGCCUCGa -3'
miRNA:   3'- -CC-GGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17895 0.72 0.259063
Target:  5'- aGGCCGGUUUcuGUCAAGUUAGCUUUGa -3'
miRNA:   3'- -CCGGCCGAAccCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 19668 0.71 0.299147
Target:  5'- aGGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- -CCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 19403 0.71 0.299147
Target:  5'- aGGCUaGCUUGGuCCAAGCcGGCCUgGa -3'
miRNA:   3'- -CCGGcCGAACCcGGUUCGaUCGGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.