miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28302 3' -59.7 NC_005905.1 + 17420 0.98 0.003588
Target:  5'- aGGuuGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCggCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 22106 0.98 0.003797
Target:  5'- aGGCCGGUUUGGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11755 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11820 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8734 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11105 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11170 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11235 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11300 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11365 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11625 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 20015 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11495 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11690 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11430 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 11560 0.96 0.005331
Target:  5'- -aCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17200 0.96 0.005484
Target:  5'- aGGuuGGCUUGGGCCAAGCUAGCUUCa -3'
miRNA:   3'- -CCggCCGAACCCGGUUCGAUCGGAGc -5'
28302 3' -59.7 NC_005905.1 + 8689 0.96 0.005642
Target:  5'- -cCCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17639 0.94 0.007073
Target:  5'- aGGCCGGCUUGGaCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCcGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17769 0.94 0.007073
Target:  5'- aGGCCGGCUUGGaCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCcGGUUCGAUCGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.