Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28302 | 3' | -59.7 | NC_005905.1 | + | 22176 | 0.7 | 0.343865 |
Target: 5'- aGGCCGGCUUGGGUCGAaUgAGUCg-- -3' miRNA: 3'- -CCGGCCGAACCCGGUUcGaUCGGagc -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 49084 | 0.7 | 0.343865 |
Target: 5'- -aCCGGCUUGaGCCAAcCgAGCCUCGa -3' miRNA: 3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 49129 | 0.7 | 0.343865 |
Target: 5'- -aCCGGCUUGaGCCAAcCgAGCCUCGa -3' miRNA: 3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 49219 | 0.7 | 0.343865 |
Target: 5'- -aCCGGCUUGaGCCAAcCgAGCCUCGa -3' miRNA: 3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 49264 | 0.7 | 0.343865 |
Target: 5'- -aCCGGCUUGaGCCAAcCgAGCCUCGa -3' miRNA: 3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 49447 | 0.73 | 0.229104 |
Target: 5'- uGGaCCGGCUUGaGCCGAcCgAGCCUCGa -3' miRNA: 3'- -CC-GGCCGAACcCGGUUcGaUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17353 | 0.77 | 0.130146 |
Target: 5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3' miRNA: 3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17463 | 0.77 | 0.130146 |
Target: 5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3' miRNA: 3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17573 | 0.77 | 0.130146 |
Target: 5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3' miRNA: 3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 49309 | 0.7 | 0.367964 |
Target: 5'- -aCCGGCUUGaGCCGAcCgAGCCUCGa -3' miRNA: 3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 49174 | 0.7 | 0.367964 |
Target: 5'- -aCCGGCUUGaGCCGAcCgAGCCUCGa -3' miRNA: 3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 17133 | 0.66 | 0.575235 |
Target: 5'- -cCCGGCUUGaGCCGAGUUAGUUaUGg -3' miRNA: 3'- ccGGCCGAACcCGGUUCGAUCGGaGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 21736 | 0.66 | 0.564944 |
Target: 5'- aGGCCGGCUUGaGCCGuugaGGUgGGUCaCGa -3' miRNA: 3'- -CCGGCCGAACcCGGU----UCGaUCGGaGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 22014 | 0.66 | 0.564944 |
Target: 5'- -uUCGGUUUGaaCCAAGUUAGCUUCGa -3' miRNA: 3'- ccGGCCGAACccGGUUCGAUCGGAGC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8730 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8904 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8949 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 9124 | 0.67 | 0.514343 |
Target: 5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3' miRNA: 3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 49354 | 0.67 | 0.504435 |
Target: 5'- -aCCGGCUUGaGCCGAcCgAGCCUCa -3' miRNA: 3'- ccGGCCGAACcCGGUUcGaUCGGAGc -5' |
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28302 | 3' | -59.7 | NC_005905.1 | + | 8795 | 0.68 | 0.494611 |
Target: 5'- aGCUaGCUUGGcccaaGCCGGGCUGGaCUCGa -3' miRNA: 3'- cCGGcCGAACC-----CGGUUCGAUCgGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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