miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28302 3' -59.7 NC_005905.1 + 17859 0.79 0.087092
Target:  5'- aGCuCGGCUUGuGCCGAGUUAGCUUCGa -3'
miRNA:   3'- cCG-GCCGAACcCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17573 0.77 0.130146
Target:  5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49399 0.7 0.367964
Target:  5'- -aCCGGCUUGaGCCGAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8904 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 17769 0.94 0.007073
Target:  5'- aGGCCGGCUUGGaCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACCcGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 22061 0.9 0.013922
Target:  5'- aGGCCGGCUUGaGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGCCGAACcCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17353 0.77 0.130146
Target:  5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8730 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 19667 0.9 0.016026
Target:  5'- aGGUCGuCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCGGCcGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 22014 0.66 0.564944
Target:  5'- -uUCGGUUUGaaCCAAGUUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACccGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17463 0.77 0.130146
Target:  5'- -cCCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccGGCCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 22151 0.82 0.059423
Target:  5'- aGGCCuGCUUuGGCCAAGUUAGCUUCGa -3'
miRNA:   3'- -CCGGcCGAAcCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 49219 0.7 0.343865
Target:  5'- -aCCGGCUUGaGCCAAcCgAGCCUCGa -3'
miRNA:   3'- ccGGCCGAACcCGGUUcGaUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 22176 0.7 0.343865
Target:  5'- aGGCCGGCUUGGGUCGAaUgAGUCg-- -3'
miRNA:   3'- -CCGGCCGAACCCGGUUcGaUCGGagc -5'
28302 3' -59.7 NC_005905.1 + 8795 0.68 0.494611
Target:  5'- aGCUaGCUUGGcccaaGCCGGGCUGGaCUCGa -3'
miRNA:   3'- cCGGcCGAACC-----CGGUUCGAUCgGAGC- -5'
28302 3' -59.7 NC_005905.1 + 8949 0.67 0.514343
Target:  5'- aGCUaGCUUGGcCCAAGCcGGCCUgGa -3'
miRNA:   3'- cCGGcCGAACCcGGUUCGaUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 17310 0.98 0.003588
Target:  5'- aGGuuGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCggCCGAACCCGGUUCGAUCGGAGC- -5'
28302 3' -59.7 NC_005905.1 + 17200 0.96 0.005484
Target:  5'- aGGuuGGCUUGGGCCAAGCUAGCUUCa -3'
miRNA:   3'- -CCggCCGAACCCGGUUCGAUCGGAGc -5'
28302 3' -59.7 NC_005905.1 + 19513 0.93 0.00965
Target:  5'- aGGCCGGCUUGGaCCAAGCUAGCCUgGa -3'
miRNA:   3'- -CCGGCCGAACCcGGUUCGAUCGGAgC- -5'
28302 3' -59.7 NC_005905.1 + 17243 0.91 0.012093
Target:  5'- -cCCGGCUUGGGCCGAGUUAGCUUCGa -3'
miRNA:   3'- ccGGCCGAACCCGGUUCGAUCGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.