Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28302 | 5' | -61.5 | NC_005905.1 | + | 11810 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17145 | 0.8 | 0.04997 |
Target: 5'- uAUCGAGUCCAGcCCGGCUUGaGCCGAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACcCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17210 | 0.88 | 0.011888 |
Target: 5'- gAUCGAGaCCAGGuuGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCaGGUCCggCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17255 | 0.91 | 0.00693 |
Target: 5'- uAUCGAGUCCAGcCCGGCUUGGGCCGAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17320 | 0.88 | 0.011888 |
Target: 5'- gAUCGAGaCCAGGuuGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCaGGUCCggCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17365 | 0.76 | 0.096682 |
Target: 5'- uAUCGAGUUCAGcCCGGCUUaGGCCGAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAAcCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17430 | 0.88 | 0.011888 |
Target: 5'- gAUCGAGaCCAGGuuGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCaGGUCCggCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17475 | 0.76 | 0.096682 |
Target: 5'- uAUCGAGUUCAGcCCGGCUUaGGCCGAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAAcCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17540 | 0.88 | 0.011888 |
Target: 5'- gAUCGAGaCCAGGuuGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCaGGUCCggCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17585 | 0.76 | 0.096682 |
Target: 5'- uAUCGAGUUCAGcCCGGCUUaGGCCGAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAAcCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17649 | 0.92 | 0.006011 |
Target: 5'- uAUCGAGUCCAGGCCGGCUUGGaCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCcGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17714 | 1.04 | 0.000818 |
Target: 5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17779 | 0.82 | 0.032859 |
Target: 5'- uAUCGAaUCCAGGCCGGCUUGGaCCAAg -3' miRNA: 3'- -UAGCUcAGGUCCGGCCGAACCcGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17824 | 0.95 | 0.003401 |
Target: 5'- uAUCGAGUUUAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17869 | 0.68 | 0.345295 |
Target: 5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACcCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17887 | 0.7 | 0.272697 |
Target: 5'- -cCGAGUUCAGGCCGGUUUcuGUCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAAccCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17930 | 0.75 | 0.119934 |
Target: 5'- ---aAGUCCAGuCCGGUUUGGGCCAAg -3' miRNA: 3'- uagcUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17934 | 0.69 | 0.286173 |
Target: 5'- ---uAGUCUAGGCUGGCUUGGGagGAa -3' miRNA: 3'- uagcUCAGGUCCGGCCGAACCCggUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 19523 | 0.92 | 0.006011 |
Target: 5'- uAUCGAGUCCAGGCCGGCUUGGaCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCcGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 19588 | 0.93 | 0.005214 |
Target: 5'- uAUCGAGUCCAaGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUcCGGCCGAACCCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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