miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28303 3' -50.7 NC_005905.1 + 19769 0.95 0.036458
Target:  5'- uUGGGCCAAGCUAGCcUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGaAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17916 0.96 0.032347
Target:  5'- uUGGGCCAAGCUAGCUcUGACAAAUCa -3'
miRNA:   3'- -ACCCGGUUCGAUCGAaGCUGUUUAGa -5'
28303 3' -50.7 NC_005905.1 + 17192 0.96 0.028693
Target:  5'- uUGGGCCAAGCUAGCUUCaACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGcUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 11826 0.97 0.024694
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAGUa- -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAga -5'
28303 3' -50.7 NC_005905.1 + 21873 0.98 0.023962
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 21918 0.98 0.023962
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 21963 0.98 0.023962
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 22098 0.98 0.023962
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 8740 0.99 0.020003
Target:  5'- uUGGGCCAAGCUAGCUUCGACA-AUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUuUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17237 0.99 0.020003
Target:  5'- uUGGGCCGAGUUAGCUUCGACAAAUUUg -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 20179 1 0.016693
Target:  5'- uUGGGCCAAGCUAGCcUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGaAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 20009 1.01 0.013926
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUa- -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAga -5'
28303 3' -50.7 NC_005905.1 + 9023 1.03 0.010607
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 8695 1.03 0.010607
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 20054 1.03 0.010607
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 19659 1.03 0.010607
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 19879 1.03 0.010607
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17806 1.03 0.010607
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 8804 1.03 0.010607
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 19834 1.03 0.009984
Target:  5'- uUGGGCCAAGUUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.