Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28303 | 3' | -50.7 | NC_005905.1 | + | 11501 | 1.04 | 0.008581 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 11566 | 1.04 | 0.008581 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 19834 | 1.03 | 0.009984 |
Target: 5'- uUGGGCCAAGUUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 19879 | 1.03 | 0.010607 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 20054 | 1.03 | 0.010607 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 19659 | 1.03 | 0.010607 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 17806 | 1.03 | 0.010607 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 8695 | 1.03 | 0.010607 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 9023 | 1.03 | 0.010607 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 8804 | 1.03 | 0.010607 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 20009 | 1.01 | 0.013926 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUa- -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAga -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 20179 | 1 | 0.016693 |
Target: 5'- uUGGGCCAAGCUAGCcUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGaAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 8740 | 0.99 | 0.020003 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACA-AUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUuUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 17237 | 0.99 | 0.020003 |
Target: 5'- uUGGGCCGAGUUAGCUUCGACAAAUUUg -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 22098 | 0.98 | 0.023962 |
Target: 5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 21963 | 0.98 | 0.023962 |
Target: 5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 21918 | 0.98 | 0.023962 |
Target: 5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 21873 | 0.98 | 0.023962 |
Target: 5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 11826 | 0.97 | 0.024694 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAGUa- -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGCUGUUUAga -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 17192 | 0.96 | 0.028693 |
Target: 5'- uUGGGCCAAGCUAGCUUCaACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGcUGUUUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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