miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28303 3' -50.7 NC_005905.1 + 11696 1.04 0.008581
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 11761 1.04 0.008581
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 11826 0.97 0.024694
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAGUa- -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAga -5'
28303 3' -50.7 NC_005905.1 + 13379 0.69 0.872956
Target:  5'- gGGGCCAAccGUguuGCUUUGACGAAg-- -3'
miRNA:   3'- aCCCGGUU--CGau-CGAAGCUGUUUaga -5'
28303 3' -50.7 NC_005905.1 + 17192 0.96 0.028693
Target:  5'- uUGGGCCAAGCUAGCUUCaACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGcUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17237 0.99 0.020003
Target:  5'- uUGGGCCGAGUUAGCUUCGACAAAUUUg -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17302 1.08 0.004822
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17345 0.85 0.143806
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17412 1.08 0.004822
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17455 0.85 0.143806
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17522 1.08 0.004822
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17565 0.85 0.143806
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17631 0.94 0.039873
Target:  5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCcGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17696 1.08 0.004822
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17761 0.94 0.039873
Target:  5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCcGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17806 1.03 0.010607
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17851 0.84 0.184684
Target:  5'- uUGuGCCGAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACcCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17899 0.73 0.652236
Target:  5'- cGGuuucuGUCAAGUUAGCUUUGACGAGUUUu -3'
miRNA:   3'- aCC-----CGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17916 0.96 0.032347
Target:  5'- uUGGGCCAAGCUAGCUcUGACAAAUCa -3'
miRNA:   3'- -ACCCGGUUCGAUCGAaGCUGUUUAGa -5'
28303 3' -50.7 NC_005905.1 + 19505 0.66 0.961494
Target:  5'- uUGGaCCAAGCUAGCcUgGAUAAAa-- -3'
miRNA:   3'- -ACCcGGUUCGAUCGaAgCUGUUUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.