miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28303 5' -54 NC_005905.1 + 22168 0.66 0.840368
Target:  5'- uUGGGUcgAaUGAGUCgAGGCCuGCUu -3'
miRNA:   3'- aAUCCAaaUaGCUCAGgUCCGGcCGA- -5'
28303 5' -54 NC_005905.1 + 22189 0.69 0.691009
Target:  5'- ----uUUUAUCuAGcCCAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUAGcUCaGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17878 0.7 0.647498
Target:  5'- --cGGcUUAaacCGAGUUCAGGCCGGUUu -3'
miRNA:   3'- aauCCaAAUa--GCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11804 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11739 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11089 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11154 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11219 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11284 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11349 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11414 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11479 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11544 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11609 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11674 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 8609 0.72 0.50752
Target:  5'- ----uUUUAcCGuGUCCAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUaGCuCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21807 0.72 0.49719
Target:  5'- -aAGuUUUAcCGAGUUUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 22077 0.72 0.486956
Target:  5'- -gAGuUUUAcCGAGUUUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 20202 0.73 0.476822
Target:  5'- -cAGcg-UAUCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaUCcaaAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 9047 0.74 0.399889
Target:  5'- ----uUUUAcCGAGUCCAGGUCGGCUu -3'
miRNA:   3'- aauccAAAUaGCUCAGGUCCGGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.