miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28303 5' -54 NC_005905.1 + 8828 0.79 0.204455
Target:  5'- ----uUUUAcCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 22119 0.79 0.20993
Target:  5'- ----uUUUAUCGAGUCUAGGCCGGUUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17827 0.78 0.227117
Target:  5'- ----uUUUAUCGAGUUUAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17877 0.78 0.239226
Target:  5'- aUUAGGUUUAUCGAGUUUAGcUCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21987 0.77 0.258396
Target:  5'- -gAGuUUUAcCGAGUCUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21942 0.77 0.258396
Target:  5'- -gAGuUUUAcCGAGUCUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21897 0.77 0.258396
Target:  5'- -gAGuUUUAcCGAGUCUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21852 0.77 0.258396
Target:  5'- -gAGuUUUAcCGAGUCUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 17782 0.77 0.293108
Target:  5'- ----uUUUAUCGAaUCCAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUcAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19591 0.76 0.331355
Target:  5'- ----uUUUAUCGAGUCCAaGCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUcCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 20030 0.75 0.373149
Target:  5'- ----uUUUAUCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19855 0.75 0.373149
Target:  5'- ----uUUUAUCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19635 0.75 0.373149
Target:  5'- ----uUUUAUCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 9047 0.74 0.399889
Target:  5'- ----uUUUAcCGAGUCCAGGUCGGCUu -3'
miRNA:   3'- aauccAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 20202 0.73 0.476822
Target:  5'- -cAGcg-UAUCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaUCcaaAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 22077 0.72 0.486956
Target:  5'- -gAGuUUUAcCGAGUUUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21807 0.72 0.49719
Target:  5'- -aAGuUUUAcCGAGUUUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 8609 0.72 0.50752
Target:  5'- ----uUUUAcCGuGUCCAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUaGCuCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11349 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 11414 0.7 0.61468
Target:  5'- ---aGUUUGcCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaucCAAAUaGCUCAGGUCcGGCCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.