miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28310 3' -60 NC_005905.1 + 9062 0.66 0.612076
Target:  5'- -gUCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 20060 0.66 0.612076
Target:  5'- -gUCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 17310 0.66 0.601768
Target:  5'- aGGuuGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUggCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 17420 0.66 0.601768
Target:  5'- aGGuuGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUggCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 17530 0.66 0.601768
Target:  5'- aGGuuGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUggCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 8908 0.67 0.560837
Target:  5'- -cCCGGCUUGGGCaGAgUuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGgCUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 22106 0.68 0.453479
Target:  5'- aGGCCGGUUUGGGCCaAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 17859 0.69 0.426136
Target:  5'- aGCuCGGCUUGuGCCGAgUuAGCUUCGa -3'
miRNA:   3'- cUG-GCCGAACuCGGCUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 8689 0.69 0.426136
Target:  5'- -cCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- cuGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 8733 0.72 0.291445
Target:  5'- aACCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- cUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 21736 0.72 0.277984
Target:  5'- aGGCCGGCUUGAGCCGuugaGgUGGGUCaCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGC----UgGCUCGGaGC- -5'
28310 3' -60 NC_005905.1 + 19577 0.72 0.271442
Target:  5'- aGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- cUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 21881 0.72 0.265024
Target:  5'- aGGCCGGCUUGGGCCaAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 21926 0.72 0.265024
Target:  5'- aGGCCGGCUUGGGCCaAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 21971 0.72 0.265024
Target:  5'- aGGCCGGCUUGGGCCaAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 19622 0.73 0.246508
Target:  5'- aGACCGGCUUGGGCCaAgCuAGCUUCa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGc -5'
28310 3' -60 NC_005905.1 + 19842 0.73 0.229077
Target:  5'- aGACCGGCUUGGGCCaAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 22061 0.74 0.212699
Target:  5'- aGGCCGGCUUGAGCCaAgUuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5'
28310 3' -60 NC_005905.1 + 22176 0.74 0.212699
Target:  5'- aGGCCGGCUUGGGUCGAaugagUCGAGgCCUg- -3'
miRNA:   3'- -CUGGCCGAACUCGGCU-----GGCUC-GGAgc -5'
28310 3' -60 NC_005905.1 + 8796 0.74 0.197337
Target:  5'- aGGCCGGCUUGGGCCaAgCuAGCUUCGa -3'
miRNA:   3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.