Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28310 | 3' | -60 | NC_005905.1 | + | 49401 | 1.09 | 0.000694 |
Target: 5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGCUGGCUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 49311 | 1.09 | 0.000694 |
Target: 5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGCUGGCUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 49176 | 1.09 | 0.000694 |
Target: 5'- aGACCGGCUUGAGCCGACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGCUGGCUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 49446 | 1.08 | 0.000734 |
Target: 5'- gGACCGGCUUGAGCCGACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGCUGGCUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 49356 | 1.06 | 0.001058 |
Target: 5'- aGACCGGCUUGAGCCGACCGAGCCUCa -3' miRNA: 3'- -CUGGCCGAACUCGGCUGGCUCGGAGc -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 49041 | 1.04 | 0.0014 |
Target: 5'- aGACCGGCUUGAGCCGACCGAGCUUCGg -3' miRNA: 3'- -CUGGCCGAACUCGGCUGGCUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 49131 | 0.99 | 0.003635 |
Target: 5'- aGACCGGCUUGAGCCaACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUGGCUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 49221 | 0.99 | 0.003635 |
Target: 5'- aGACCGGCUUGAGCCaACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUGGCUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 49086 | 0.99 | 0.003635 |
Target: 5'- aGACCGGCUUGAGCCaACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUGGCUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 49266 | 0.99 | 0.003635 |
Target: 5'- aGACCGGCUUGAGCCaACCGAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUGGCUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 49490 | 0.89 | 0.018913 |
Target: 5'- aGACCGGCUUGAGCCuACCGGGUUUCGg -3' miRNA: 3'- -CUGGCCGAACUCGGcUGGCUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 20187 | 0.8 | 0.08333 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 19777 | 0.79 | 0.097853 |
Target: 5'- aGGCCGGCUUGGGCCaAgCuAGCCUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 17243 | 0.77 | 0.137876 |
Target: 5'- -cCCGGCUUGGGCCGAgUuAGCUUCGa -3' miRNA: 3'- cuGGCCGAACUCGGCUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 8951 | 0.76 | 0.156945 |
Target: 5'- aGGCCGGCUUGAGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11818 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11753 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11168 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11103 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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28310 | 3' | -60 | NC_005905.1 | + | 11363 | 0.75 | 0.169503 |
Target: 5'- aGACCGGCUUGGGCCaAgCuAGCUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGcUgGcUCGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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