miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28310 5' -53.7 NC_005905.1 + 17931 0.69 0.716203
Target:  5'- --aAAGUCcAGuCCGGUUUGGGCCa- -3'
miRNA:   3'- uagUUCAGaUCuGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17210 0.7 0.640506
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17430 0.7 0.640506
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 22026 0.7 0.640506
Target:  5'- uAUCGAGUCUAGuuCGGUUUGAaCCa- -3'
miRNA:   3'- -UAGUUCAGAUCugGCCGAACUcGGcu -5'
28310 5' -53.7 NC_005905.1 + 17320 0.7 0.640506
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17540 0.7 0.640506
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17931 0.73 0.501101
Target:  5'- -aCAuAGUCUAGGCUGGCUUGGGagGAa -3'
miRNA:   3'- uaGU-UCAGAUCUGGCCGAACUCggCU- -5'
28310 5' -53.7 NC_005905.1 + 9052 0.74 0.431535
Target:  5'- -cCGAGUCcAGGUCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 8724 0.74 0.422061
Target:  5'- -cCGAGUCcaaACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUCAGaucUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17475 0.75 0.38545
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 17365 0.75 0.38545
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 17585 0.75 0.38545
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 22205 0.76 0.348508
Target:  5'- aAUCAAGauguccaaauuuuaUCUagcccAGGCCGGCUUGGGUCGAa -3'
miRNA:   3'- -UAGUUC--------------AGA-----UCUGGCCGAACUCGGCU- -5'
28310 5' -53.7 NC_005905.1 + 8614 0.76 0.334616
Target:  5'- -cCGuGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUuCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 17649 0.76 0.318797
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUcGGcu -5'
28310 5' -53.7 NC_005905.1 + 19523 0.76 0.318797
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUcGGcu -5'
28310 5' -53.7 NC_005905.1 + 8896 0.77 0.3111
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCaGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGgCU- -5'
28310 5' -53.7 NC_005905.1 + 21799 0.78 0.254607
Target:  5'- -cCGAGUUUAGGCCGGCUUuGGCCa- -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAAcUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 20072 0.78 0.248169
Target:  5'- uAUCGAGUCcAGGUCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5'
28310 5' -53.7 NC_005905.1 + 19588 0.79 0.223757
Target:  5'- uAUCGAGUCcaaGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUCAGaucUGGCCGAACUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.