Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28310 | 5' | -53.7 | NC_005905.1 | + | 17824 | 0.92 | 0.030275 |
Target: 5'- uAUCGAGUUUAGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 20197 | 0.9 | 0.044224 |
Target: 5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 17145 | 0.9 | 0.045526 |
Target: 5'- uAUCGAGUCcAGcCCGGCUUGAGCCGAg -3' miRNA: 3'- -UAGUUCAGaUCuGGCCGAACUCGGCU- -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 19897 | 0.89 | 0.05262 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 49186 | 0.95 | 0.018384 |
Target: 5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUcAGAUCUGGCCGAACUCGGCU- -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 21979 | 0.93 | 0.02773 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGAUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 19852 | 0.9 | 0.044224 |
Target: 5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 19787 | 0.89 | 0.05262 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 21934 | 0.93 | 0.02773 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUCAGAUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 19742 | 0.89 | 0.05262 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 20027 | 0.9 | 0.044224 |
Target: 5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 22116 | 0.93 | 0.028554 |
Target: 5'- uAUCGAGUCUAGGCCGGUUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 19632 | 0.9 | 0.044224 |
Target: 5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 22069 | 0.9 | 0.045526 |
Target: 5'- -cCGAGUUUAGGCCGGCUUGAGCCa- -3' miRNA: 3'- uaGUUCAGAUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 20137 | 0.89 | 0.05262 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 19962 | 0.89 | 0.05262 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGcu -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 49366 | 1.07 | 0.003117 |
Target: 5'- uAUCAAGUCUAGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGCU- -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 49321 | 0.95 | 0.018384 |
Target: 5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUcAGAUCUGGCCGAACUCGGCU- -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 49051 | 0.95 | 0.018384 |
Target: 5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUcAGAUCUGGCCGAACUCGGCU- -5' |
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28310 | 5' | -53.7 | NC_005905.1 | + | 49456 | 0.95 | 0.02008 |
Target: 5'- uAUCAAaUCUGGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUcAGAUCUGGCCGAACUCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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