Results 1 - 20 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 20017 | 0.66 | 0.792283 |
Target: 5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 11103 | 0.66 | 0.792283 |
Target: 5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 11168 | 0.66 | 0.792283 |
Target: 5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 11233 | 0.66 | 0.792283 |
Target: 5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 11298 | 0.66 | 0.792283 |
Target: 5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 11363 | 0.66 | 0.792283 |
Target: 5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 11428 | 0.66 | 0.792283 |
Target: 5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 11493 | 0.66 | 0.792283 |
Target: 5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 11558 | 0.66 | 0.792283 |
Target: 5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 11623 | 0.66 | 0.792283 |
Target: 5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 11688 | 0.66 | 0.792283 |
Target: 5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 11753 | 0.66 | 0.792283 |
Target: 5'- aGACCGGCUUGGGCCaaGCUa-GcUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 8951 | 0.67 | 0.763322 |
Target: 5'- aGGCCGGCUUGAGCCaaGCUa-GcUUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa-UGGccCaAAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 11818 | 0.72 | 0.443764 |
Target: 5'- aGACCGGCUUGGGCCaagcuagcuucgaUAaguaCGGGUguugUUGa -3' miRNA: 3'- -CUGGCCGAACUCGG-------------AUg---GCCCAa---AGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 49356 | 0.75 | 0.295066 |
Target: 5'- aGACCGGCUUGAGCCgACCGaGccUCa -3' miRNA: 3'- -CUGGCCGAACUCGGaUGGCcCaaAGc -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 21736 | 0.76 | 0.281086 |
Target: 5'- aGGCCGGCUUGAGCCguugaGgUGGGUcaCGa -3' miRNA: 3'- -CUGGCCGAACUCGGa----UgGCCCAaaGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 49446 | 0.78 | 0.21348 |
Target: 5'- gGACCGGCUUGAGCCgACCGaGccUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGaUGGCcCaaAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 49086 | 0.78 | 0.2028 |
Target: 5'- aGACCGGCUUGAGCCaACCGaGccUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGaUGGCcCaaAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 49131 | 0.78 | 0.2028 |
Target: 5'- aGACCGGCUUGAGCCaACCGaGccUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGaUGGCcCaaAGC- -5' |
|||||||
28311 | 3' | -55.9 | NC_005905.1 | + | 49176 | 0.78 | 0.2028 |
Target: 5'- aGACCGGCUUGAGCCgACCGaGccUCGa -3' miRNA: 3'- -CUGGCCGAACUCGGaUGGCcCaaAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home