Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28311 | 5' | -53.4 | NC_005905.1 | + | 49456 | 1.07 | 0.003312 |
Target: 5'- uAUCAAAUCUGGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUUAGACCUGGCCGAACUCGGCU- -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 49051 | 0.94 | 0.022703 |
Target: 5'- uAUCAAAUCUaGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUUAGAcCUGGCCGAACUCGGCU- -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 49186 | 0.94 | 0.022703 |
Target: 5'- uAUCAAAUCUaGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUUAGAcCUGGCCGAACUCGGCU- -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 49366 | 0.94 | 0.022703 |
Target: 5'- uAUCAAGUCUaGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUUAGAcCUGGCCGAACUCGGCU- -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 49411 | 0.94 | 0.022703 |
Target: 5'- uAUCAAAUCUaGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUUAGAcCUGGCCGAACUCGGCU- -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 49321 | 0.94 | 0.022703 |
Target: 5'- uAUCAAAUCUaGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUUAGAcCUGGCCGAACUCGGCU- -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 49096 | 0.88 | 0.059489 |
Target: 5'- uAUCAAGUCUaGACCGGCUUGAGCCa- -3' miRNA: 3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 49141 | 0.88 | 0.059489 |
Target: 5'- uAUCAAGUCUaGACCGGCUUGAGCCa- -3' miRNA: 3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 49276 | 0.88 | 0.059489 |
Target: 5'- uAUCAAGUCUaGACCGGCUUGAGCCa- -3' miRNA: 3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 49231 | 0.88 | 0.059489 |
Target: 5'- uAUCAAGUCUaGACCGGCUUGAGCCa- -3' miRNA: 3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 49500 | 0.87 | 0.068701 |
Target: 5'- uAUCAAGUCUaGACCGGCUUGAGCCu- -3' miRNA: 3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 21934 | 0.81 | 0.187662 |
Target: 5'- -cCGAGUCUaGGCCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUUAGAcCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 21889 | 0.81 | 0.187662 |
Target: 5'- -cCGAGUCUaGGCCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUUAGAcCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 21979 | 0.81 | 0.187662 |
Target: 5'- -cCGAGUCUaGGCCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUUAGAcCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 17824 | 0.8 | 0.203282 |
Target: 5'- uAUCGAGUUUaGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 19852 | 0.8 | 0.203282 |
Target: 5'- uAUCGAGUCcaGACCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 20197 | 0.8 | 0.203282 |
Target: 5'- uAUCGAGUCcaGACCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 19632 | 0.8 | 0.203282 |
Target: 5'- uAUCGAGUCcaGACCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 22116 | 0.8 | 0.192748 |
Target: 5'- uAUCGAGUCUaGGCCGGUUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 17145 | 0.8 | 0.208733 |
Target: 5'- uAUCGAGUCcaGcCCGGCUUGAGCCGAg -3' miRNA: 3'- -UAGUUUAGacCuGGCCGAACUCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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