Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28311 | 5' | -53.4 | NC_005905.1 | + | 21799 | 0.66 | 0.887284 |
Target: 5'- -cCGAGUUUaGGCCGGCUUuGGCCa- -3' miRNA: 3'- uaGUUUAGAcCUGGCCGAAcUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 20137 | 0.79 | 0.237912 |
Target: 5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 17824 | 0.8 | 0.203282 |
Target: 5'- uAUCGAGUUUaGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGAcCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 49456 | 1.07 | 0.003312 |
Target: 5'- uAUCAAAUCUGGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUUAGACCUGGCCGAACUCGGCU- -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 17869 | 0.68 | 0.762819 |
Target: 5'- uAUCGAGUUUaGcUCGGCUUGuGCCGAg -3' miRNA: 3'- -UAGUUUAGAcCuGGCCGAACuCGGCU- -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 21844 | 0.7 | 0.678259 |
Target: 5'- -cCGAGUCUaGGCCGGCUUGAaCCa- -3' miRNA: 3'- uaGUUUAGAcCUGGCCGAACUcGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 20072 | 0.72 | 0.569174 |
Target: 5'- uAUCGAGUCcaGG-UCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGa-CCuGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 21744 | 0.75 | 0.407253 |
Target: 5'- -gCGAGUauaGGCCGGCUUGAGCCGu -3' miRNA: 3'- uaGUUUAgacCUGGCCGAACUCGGCu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 17255 | 0.78 | 0.263649 |
Target: 5'- uAUCGAGUCcaGcCCGGCUUGGGCCGAg -3' miRNA: 3'- -UAGUUUAGacCuGGCCGAACUCGGCU- -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 19962 | 0.79 | 0.237912 |
Target: 5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 19742 | 0.79 | 0.237912 |
Target: 5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 22069 | 0.77 | 0.291601 |
Target: 5'- -cCGAGUUUaGGCCGGCUUGAGCCa- -3' miRNA: 3'- uaGUUUAGAcCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 17649 | 0.67 | 0.855986 |
Target: 5'- uAUCGAGUCcaGGCCGGCUUGGaCCa- -3' miRNA: 3'- -UAGUUUAGacCUGGCCGAACUcGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 19787 | 0.79 | 0.237912 |
Target: 5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 17779 | 0.67 | 0.855986 |
Target: 5'- uAUCGAAUCcaGGCCGGCUUGGaCCa- -3' miRNA: 3'- -UAGUUUAGacCUGGCCGAACUcGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 19588 | 0.75 | 0.389062 |
Target: 5'- uAUCGAGUCcaaGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGaccUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 19897 | 0.79 | 0.237912 |
Target: 5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 17145 | 0.8 | 0.208733 |
Target: 5'- uAUCGAGUCcaGcCCGGCUUGAGCCGAg -3' miRNA: 3'- -UAGUUUAGacCuGGCCGAACUCGGCU- -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 19523 | 0.67 | 0.855986 |
Target: 5'- uAUCGAGUCcaGGCCGGCUUGGaCCa- -3' miRNA: 3'- -UAGUUUAGacCUGGCCGAACUcGGcu -5' |
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28311 | 5' | -53.4 | NC_005905.1 | + | 22191 | 0.7 | 0.656465 |
Target: 5'- aAUUuuAUCUagcccaGGCCGGCUUGGGUCGAa -3' miRNA: 3'- -UAGuuUAGAc-----CUGGCCGAACUCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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