Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28312 | 3' | -47.5 | NC_005905.1 | + | 17519 | 1.08 | 0.009505 |
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Target: 5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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| 28312 | 3' | -47.5 | NC_005905.1 | + | 17409 | 1.08 | 0.009505 |
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Target: 5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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| 28312 | 3' | -47.5 | NC_005905.1 | + | 17299 | 1.08 | 0.009505 |
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Target: 5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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| 28312 | 3' | -47.5 | NC_005905.1 | + | 9071 | 1.08 | 0.009505 |
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Target: 5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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| 28312 | 3' | -47.5 | NC_005905.1 | + | 20116 | 1.08 | 0.009505 |
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Target: 5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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| 28312 | 3' | -47.5 | NC_005905.1 | + | 8633 | 1.09 | 0.008658 |
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Target: 5'- gGCCAAGCUAGCUUCGACAAAUCUCAAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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| 28312 | 3' | -47.5 | NC_005905.1 | + | 8852 | 1.09 | 0.008658 |
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Target: 5'- gGCCAAGCUAGCUUCGACAGAUCUCAAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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