miRNA display CGI


Results 41 - 60 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28312 3' -47.5 NC_005905.1 + 8743 0.99 0.037111
Target:  5'- gGCCAAGCUAGCUUCGAC-AAUCUCAAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGuUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 20176 1 0.033844
Target:  5'- gGCCAAGCUAGCcUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGaAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17627 1.03 0.020658
Target:  5'- aCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- cGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17757 1.03 0.020658
Target:  5'- aCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- cGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 19831 1.03 0.020028
Target:  5'- gGCCAAGUUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11374 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11114 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11179 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11244 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11309 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11764 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11699 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11634 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11569 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11504 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11439 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 20116 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 9071 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17519 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17299 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.