Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28312 | 3' | -47.5 | NC_005905.1 | + | 19766 | 0.89 | 0.16061 |
Target: 5'- gGCCAAGCUAGCcUCGACAAAUUUUAu -3' miRNA: 3'- -CGGUUCGAUCGaAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 17234 | 0.9 | 0.14315 |
Target: 5'- gGCCGAGUUAGCUUCGACAAAUUugaUCGAg -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAG---AGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 21960 | 0.92 | 0.11005 |
Target: 5'- gGCCAAGUUAGCUUCGACGAGUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 21915 | 0.92 | 0.11005 |
Target: 5'- gGCCAAGUUAGCUUCGACGAGUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 21870 | 0.92 | 0.11005 |
Target: 5'- gGCCAAGUUAGCUUCGACGAGUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 11050 | 0.92 | 0.11005 |
Target: 5'- aCCAcGCUAGCUUCGAUAAAUCUCAAg -3' miRNA: 3'- cGGUuCGAUCGAAGCUGUUUAGAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 22095 | 0.92 | 0.11005 |
Target: 5'- gGCCAAGUUAGCUUCGACGAGUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 17848 | 0.92 | 0.106849 |
Target: 5'- uGCCGAGUUAGCUUCGACAAAUUUUAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 22140 | 0.92 | 0.097765 |
Target: 5'- gGCCAAGUUAGCUUCGACAAAUUUUAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 22050 | 0.93 | 0.092119 |
Target: 5'- aGCCAAGUUAGCUUCGACAAAUUUUAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 20006 | 0.95 | 0.064244 |
Target: 5'- gGCCAAGCUAGCUUCGACAAAUaUCGAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAgAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 17189 | 0.96 | 0.058663 |
Target: 5'- gGCCAAGCUAGCUUCaACAAAUCUCGAu -3' miRNA: 3'- -CGGUUCGAUCGAAGcUGUUUAGAGUU- -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8807 | 0.97 | 0.048876 |
Target: 5'- gGCCAAGCUAGCUUCGACAAAUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 9026 | 0.97 | 0.048876 |
Target: 5'- gGCCAAGCUAGCUUCGACAAAUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8698 | 0.97 | 0.048876 |
Target: 5'- gGCCAAGCUAGCUUCGACAAAUUUUAc -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 17803 | 0.97 | 0.047407 |
Target: 5'- gGCCAAGCUAGCUUCGACAAAUUUUAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 20051 | 0.97 | 0.047407 |
Target: 5'- gGCCAAGCUAGCUUCGACAAAUUUUAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 19876 | 0.97 | 0.047407 |
Target: 5'- gGCCAAGCUAGCUUCGACAAAUUUUAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 19656 | 0.97 | 0.047407 |
Target: 5'- gGCCAAGCUAGCUUCGACAAAUUUUAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' |
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28312 | 3' | -47.5 | NC_005905.1 | + | 8962 | 0.99 | 0.039458 |
Target: 5'- aGCCAAGCUAGCUUCGACAAA-CUCAAu -3' miRNA: 3'- -CGGUUCGAUCGAAGCUGUUUaGAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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